Fixed bug in read pair extraction

jts · Oct 20, 2011 · 23a6f0d · 23a6f0d
1 parent 44f8500
commit 23a6f0d
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/Algorithm/HapgenUtil.cpp b/src/Algorithm/HapgenUtil.cpp
@@ -268,7 +268,7 @@ void HapgenUtil::extractHaplotypeReads(const StringVector& haplotypes,
             mateName << "idx-" << mateIdx;
             SeqItem mateItem;
             mateItem.id = mateName.str();
-            mateItem.seq = BWTAlgorithms::extractString(pBWT, idx);
+            mateItem.seq = BWTAlgorithms::extractString(pBWT, mateIdx);
             pOutMates->push_back(mateItem);
         }
     }