de novo sequence assembler using string graphs
C++ C Python Perl Makefile M4 Other
Latest commit 726e2e2 Sep 6, 2016 @jts committed on GitHub fix order of parameters to samtools sort

SGA - String Graph Assembler

SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.

For installation and usage instructions see src/README

For running examples see src/examples and the sga wiki

For questions or support contact jared.simpson --at--