de novo sequence assembler using string graphs
C++ C Python Perl Makefile M4 Other
Latest commit 0944b3f Aug 5, 2016 @jts v0.10.15

README.md

SGA - String Graph Assembler

SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.


For installation and usage instructions see src/README

For running examples see src/examples and the sga wiki

For questions or support contact jared.simpson --at-- oicr.on.ca