Kmer Count along a sequence (kmer-plot)

[jgurtowski]

For a particular input sequence, output the kmer counts from one or more bwt's.

Useful if you want to see the kmer coverage over a specific sequence.

In spirit of Amos kmer-cov-plot

[jts]

Thanks for this James, it looks great. I'll try to review and merge it in the next day or two.

[jts]

I didn't notice that the traversal algorithm was removed in the last commit so I've removed the comments specific to this code.

I have some nit-picky formatting comments - the file currently switches between in-line bracing and newline + brace. Can you standardize this? Probably best to use newline + brace since this is what the rest of SGA uses and I'd like to be consistent. Thanks!

[jgurtowski]

Kmer-count now can take a sequence file (kmer-plot functionality has been merged).

[jts]

Merged, thanks James!