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  1. neidl-connor-lab/virus-amplicon neidl-connor-lab/virus-amplicon Public

    Processing data from virus genome amplicon sequencing

    Shell 1 1

  2. neidl-connor-lab/virus-shotgun neidl-connor-lab/virus-shotgun Public

    Characterize virus stocks

    Shell 2

  3. neidl-connor-lab/transcriptomics-bulk neidl-connor-lab/transcriptomics-bulk Public

    Jackie's bulk RNA-seq workflow

    Shell

  4. neidl-connor-lab/snv-clustering neidl-connor-lab/snv-clustering Public

    Clustering samples via pairwise comparison of SNV sets

    R

  5. neidl-connor-lab/athletic-cluster neidl-connor-lab/athletic-cluster Public

    Bioinformatic methods for iScience paper "Understanding SARS-CoV-2 transmission: Linking traditional contact tracing with genomic surveillance of a SARS-CoV-2 student cluster on a large urban campus"

    Python

  6. neidl-connor-lab/alpha-spring2021 neidl-connor-lab/alpha-spring2021 Public

    Analysis of the alpha VoC on the BU campus

    Python