Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

PercentCoverage.pl broken? #132

Closed
juliema opened this issue Apr 8, 2014 · 4 comments
Closed

PercentCoverage.pl broken? #132

juliema opened this issue Apr 8, 2014 · 4 comments

Comments

@juliema
Copy link
Owner

juliema commented Apr 8, 2014

Not producing an alignment. The output files are created but nothing is written to them.
@daisieh
Copy link
Collaborator

daisieh commented Apr 8, 2014

First things first: what happens when you run test/test_all.pl debug?

@juliema
Copy link
Owner Author

juliema commented Apr 8, 2014

test_all.pl debug does not discuss this script.

@daisieh
Copy link
Collaborator

daisieh commented Apr 8, 2014

The way it is currently written, PercentCoverage expects the reference file to contain a sequence named "reference." I will push up a change to fix this momentarily.

daisieh added a commit that referenced this issue Apr 8, 2014
@daisieh
Fixes Issue #132
27e2d8a 
Makes a temp file that has the reference sequence named “reference” so
that percentcoverage doesn’t choke.
@juliema
Copy link
Owner Author

juliema commented Apr 8, 2014

Fixed!

@juliema juliema closed this as completed Apr 8, 2014
daisieh added a commit that referenced this issue Apr 27, 2014
@daisieh
Fixes Issue #132
a9b0ac8 
Makes a temp file that has the reference sequence named “reference” so
that percentcoverage doesn’t choke.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@daisieh @juliema