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404 error #329

Closed
alperyilmaz opened this issue Oct 10, 2023 · 12 comments · Fixed by jupyterhub/mybinder.org-deploy#2772
Closed

404 error #329

alperyilmaz opened this issue Oct 10, 2023 · 12 comments · Fixed by jupyterhub/mybinder.org-deploy#2772
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@alperyilmaz
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Bug description

The nbgitpuller fails and mybinder gives 404 Not Found error. My link was working fine last year but when I tried it now, it failed. Either something in nbgitpuller or mybinder.org has changed

How to reproduce

My link is here

I tried nbgitpuller link generator to generate the link with following info:

Git Environment Repository URL : https://github.com/alperyilmaz/jupyterlab-python-binder
Branch: main

Git Content Repository URL: https://github.com/alperyilmaz/jupyterlab-python-intro
Branch: master

Application to open: jupyterlab

Expected behaviour

My custom notebooks from content repo should be open

Actual behaviour

404 Not found error

Your personal set up

In my Git Environment Repository nbgitpuller version 1.2.0 is installed.

Package list
# packages in environment at /srv/conda/envs/notebook:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       2_gnu    conda-forge
aiofiles                  22.1.0             pyhd8ed1ab_0    conda-forge
aiosqlite                 0.19.0             pyhd8ed1ab_0    conda-forge
alembic                   1.11.1             pyhd8ed1ab_0    conda-forge
alsa-lib                  1.2.10               hd590300_0    conda-forge
anyio                     3.7.0              pyhd8ed1ab_1    conda-forge
aom                       3.6.1                h59595ed_0    conda-forge
argon2-cffi               21.3.0             pyhd8ed1ab_0    conda-forge
argon2-cffi-bindings      21.2.0          py311hd4cff14_3    conda-forge
asttokens                 2.2.1              pyhd8ed1ab_0    conda-forge
async-lru                 2.0.4              pyhd8ed1ab_0    conda-forge
async_generator           1.10                       py_0    conda-forge
attr                      2.5.1                h166bdaf_1    conda-forge
attrs                     23.1.0             pyh71513ae_1    conda-forge
babel                     2.12.1             pyhd8ed1ab_1    conda-forge
backcall                  0.2.0              pyh9f0ad1d_0    conda-forge
backports                 1.0                pyhd8ed1ab_3    conda-forge
backports.functools_lru_cache 1.6.4              pyhd8ed1ab_0    conda-forge
beautifulsoup4            4.12.2             pyha770c72_0    conda-forge
biopython                 1.81            py311h2582759_0    conda-forge
bleach                    6.0.0              pyhd8ed1ab_0    conda-forge
blinker                   1.6.2              pyhd8ed1ab_0    conda-forge
blosc                     1.21.5               h0f2a231_0    conda-forge
bokeh                     3.2.2              pyhd8ed1ab_0    conda-forge
brotli                    1.1.0                hd590300_1    conda-forge
brotli-bin                1.1.0                hd590300_1    conda-forge
brunsli                   0.1                  h9c3ff4c_0    conda-forge
bzip2                     1.0.8                h7f98852_4    conda-forge
c-ares                    1.20.1               hd590300_0    conda-forge
c-blosc2                  2.10.5               hb4ffafa_0    conda-forge
ca-certificates           2023.5.7             hbcca054_0    conda-forge
cairo                     1.16.0            h0c91306_1017    conda-forge
certifi                   2023.5.7           pyhd8ed1ab_0    conda-forge
certipy                   0.1.3                      py_0    conda-forge
cffi                      1.15.1          py311h409f033_3    conda-forge
charls                    2.4.2                h59595ed_0    conda-forge
charset-normalizer        3.1.0              pyhd8ed1ab_0    conda-forge
colorama                  0.4.6              pyhd8ed1ab_0    conda-forge
comm                      0.1.3              pyhd8ed1ab_0    conda-forge
contourpy                 1.1.1           py311h9547e67_1    conda-forge
coverage                  7.3.2           py311h459d7ec_0    conda-forge
cryptography              41.0.1          py311h63ff55d_0    conda-forge
cycler                    0.12.1             pyhd8ed1ab_0    conda-forge
dav1d                     1.2.1                hd590300_0    conda-forge
dbus                      1.13.6               h5008d03_3    conda-forge
debugpy                   1.6.7           py311hcafe171_0    conda-forge
decorator                 5.1.1              pyhd8ed1ab_0    conda-forge
defusedxml                0.7.1              pyhd8ed1ab_0    conda-forge
entrypoints               0.4                pyhd8ed1ab_0    conda-forge
exceptiongroup            1.1.1              pyhd8ed1ab_0    conda-forge
executing                 1.2.0              pyhd8ed1ab_0    conda-forge
expat                     2.5.0                hcb278e6_1    conda-forge
ffmpeg                    6.0.0           gpl_h334edf3_105    conda-forge
flit-core                 3.9.0              pyhd8ed1ab_0    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 hab24e00_0    conda-forge
fontconfig                2.14.2               h14ed4e7_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
fonttools                 4.43.1          py311h459d7ec_0    conda-forge
freeglut                  3.2.2                hac7e632_2    conda-forge
freetype                  2.12.1               h267a509_2    conda-forge
fribidi                   1.0.10               h36c2ea0_0    conda-forge
gettext                   0.21.1               h27087fc_0    conda-forge
giflib                    5.2.1                h0b41bf4_3    conda-forge
glib                      2.78.0               hfc55251_0    conda-forge
glib-tools                2.78.0               hfc55251_0    conda-forge
gmp                       6.2.1                h58526e2_0    conda-forge
gmpy2                     2.1.2           py311h6a5fa03_1    conda-forge
gnutls                    3.7.8                hf3e180e_0    conda-forge
graphite2                 1.3.13            h58526e2_1001    conda-forge
greenlet                  2.0.2           py311hb755f60_1    conda-forge
gst-plugins-base          1.22.6               h8e1006c_2    conda-forge
gstreamer                 1.22.6               h98fc4e7_2    conda-forge
harfbuzz                  8.2.1                h3d44ed6_0    conda-forge
hdf5                      1.14.2          nompi_h4f84152_100    conda-forge
icu                       73.2                 h59595ed_0    conda-forge
idna                      3.4                pyhd8ed1ab_0    conda-forge
imagecodecs               2023.9.18       py311h9b38416_0    conda-forge
imageio                   2.31.5             pyh8c1a49c_0    conda-forge
importlib-metadata        6.6.0              pyha770c72_0    conda-forge
importlib_metadata        6.6.0                hd8ed1ab_0    conda-forge
importlib_resources       5.12.0             pyhd8ed1ab_0    conda-forge
iniconfig                 2.0.0              pyhd8ed1ab_0    conda-forge
ipykernel                 6.23.1             pyh210e3f2_0    conda-forge
ipython                   8.16.1             pyh0d859eb_0    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
ipywidgets                8.0.6              pyhd8ed1ab_0    conda-forge
jasper                    4.0.0                h32699f2_1    conda-forge
jedi                      0.18.2             pyhd8ed1ab_0    conda-forge
jinja2                    3.1.2              pyhd8ed1ab_1    conda-forge
joblib                    1.3.2              pyhd8ed1ab_0    conda-forge
json5                     0.9.5              pyh9f0ad1d_0    conda-forge
jsonschema                4.17.3             pyhd8ed1ab_0    conda-forge
jupyter-lsp               2.2.0              pyhd8ed1ab_0    conda-forge
jupyter-offlinenotebook   0.2.2              pyh1d7be83_0    conda-forge
jupyter-resource-usage    0.7.1              pyhd8ed1ab_0    conda-forge
jupyter_client            8.2.0              pyhd8ed1ab_0    conda-forge
jupyter_core              5.3.0           py311h38be061_0    conda-forge
jupyter_events            0.6.3              pyhd8ed1ab_0    conda-forge
jupyter_server            2.7.3              pyhd8ed1ab_1    conda-forge
jupyter_server_fileid     0.9.0              pyhd8ed1ab_0    conda-forge
jupyter_server_terminals  0.4.4              pyhd8ed1ab_1    conda-forge
jupyter_server_ydoc       0.8.0              pyhd8ed1ab_0    conda-forge
jupyter_telemetry         0.1.0              pyhd8ed1ab_1    conda-forge
jupyter_ydoc              0.2.4              pyhd8ed1ab_0    conda-forge
jupyterhub-base           3.1.1              pyh2a2186d_0    conda-forge
jupyterhub-singleuser     3.1.1              pyh2a2186d_0    conda-forge
jupyterlab                4.0.6              pyhd8ed1ab_0    conda-forge
jupyterlab_launcher       0.13.1                     py_2    conda-forge
jupyterlab_pygments       0.2.2              pyhd8ed1ab_0    conda-forge
jupyterlab_server         2.22.1             pyhd8ed1ab_0    conda-forge
jupyterlab_widgets        3.0.7              pyhd8ed1ab_1    conda-forge
jxrlib                    1.1                  h7f98852_2    conda-forge
keyutils                  1.6.1                h166bdaf_0    conda-forge
kiwisolver                1.4.5           py311h9547e67_1    conda-forge
krb5                      1.21.2               h659d440_0    conda-forge
lame                      3.100             h166bdaf_1003    conda-forge
lazy_loader               0.3                pyhd8ed1ab_0    conda-forge
lcms2                     2.15                 h7f713cb_2    conda-forge
ld_impl_linux-64          2.40                 h41732ed_0    conda-forge
lerc                      4.0.0                h27087fc_0    conda-forge
libabseil                 20230802.1      cxx17_h59595ed_0    conda-forge
libaec                    1.1.2                h59595ed_1    conda-forge
libass                    0.17.1               h8fe9dca_1    conda-forge
libavif16                 1.0.1                h87da1f6_2    conda-forge
libblas                   3.9.0           18_linux64_openblas    conda-forge
libbrotlicommon           1.1.0                hd590300_1    conda-forge
libbrotlidec              1.1.0                hd590300_1    conda-forge
libbrotlienc              1.1.0                hd590300_1    conda-forge
libcap                    2.69                 h0f662aa_0    conda-forge
libcblas                  3.9.0           18_linux64_openblas    conda-forge
libclang                  15.0.7          default_h7634d5b_3    conda-forge
libclang13                15.0.7          default_h9986a30_3    conda-forge
libcups                   2.3.3                h4637d8d_4    conda-forge
libcurl                   8.3.0                hca28451_0    conda-forge
libdeflate                1.19                 hd590300_0    conda-forge
libdrm                    2.4.114              h166bdaf_0    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 h516909a_1    conda-forge
libevent                  2.1.12               hf998b51_1    conda-forge
libexpat                  2.5.0                hcb278e6_1    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libflac                   1.4.3                h59595ed_0    conda-forge
libgcc-ng                 13.1.0               he5830b7_0    conda-forge
libgcrypt                 1.10.1               h166bdaf_0    conda-forge
libgfortran-ng            13.2.0               h69a702a_0    conda-forge
libgfortran5              13.2.0               ha4646dd_0    conda-forge
libglib                   2.78.0               hebfc3b9_0    conda-forge
libglu                    9.0.0             hac7e632_1003    conda-forge
libgomp                   13.1.0               he5830b7_0    conda-forge
libgpg-error              1.47                 h71f35ed_0    conda-forge
libhwloc                  2.9.3           default_h554bfaf_1009    conda-forge
libiconv                  1.17                 h166bdaf_0    conda-forge
libidn2                   2.3.4                h166bdaf_0    conda-forge
libjpeg-turbo             2.1.5.1              hd590300_1    conda-forge
liblapack                 3.9.0           18_linux64_openblas    conda-forge
liblapacke                3.9.0           18_linux64_openblas    conda-forge
libllvm14                 14.0.6               hcd5def8_4    conda-forge
libllvm15                 15.0.7               h5cf9203_3    conda-forge
libnghttp2                1.52.0               h61bc06f_0    conda-forge
libnsl                    2.0.0                h7f98852_0    conda-forge
libogg                    1.3.4                h7f98852_1    conda-forge
libopenblas               0.3.24          pthreads_h413a1c8_0    conda-forge
libopencv                 4.8.1           py311h0f9022a_1    conda-forge
libopenvino               2023.1.0             h59595ed_0    conda-forge
libopenvino-auto-batch-plugin 2023.1.0             h59595ed_0    conda-forge
libopenvino-auto-plugin   2023.1.0             h59595ed_0    conda-forge
libopenvino-hetero-plugin 2023.1.0             h59595ed_0    conda-forge
libopenvino-intel-cpu-plugin 2023.1.0             h59595ed_0    conda-forge
libopenvino-intel-gpu-plugin 2023.1.0             h59595ed_0    conda-forge
libopenvino-ir-frontend   2023.1.0             h59595ed_0    conda-forge
libopenvino-onnx-frontend 2023.1.0             h59595ed_0    conda-forge
libopenvino-paddle-frontend 2023.1.0             h59595ed_0    conda-forge
libopenvino-pytorch-frontend 2023.1.0             h59595ed_0    conda-forge
libopenvino-tensorflow-frontend 2023.1.0             h59595ed_0    conda-forge
libopenvino-tensorflow-lite-frontend 2023.1.0             h59595ed_0    conda-forge
libopus                   1.3.1                h7f98852_1    conda-forge
libpciaccess              0.17                 h166bdaf_0    conda-forge
libpng                    1.6.39               h753d276_0    conda-forge
libpq                     15.4                 hfc447b1_2    conda-forge
libprotobuf               4.24.3               hf27288f_0    conda-forge
libsndfile                1.2.2                hc60ed4a_1    conda-forge
libsodium                 1.0.18               h36c2ea0_1    conda-forge
libsqlite                 3.43.0               h2797004_0    conda-forge
libssh2                   1.11.0               h0841786_0    conda-forge
libstdcxx-ng              13.1.0               hfd8a6a1_0    conda-forge
libsystemd0               254                  h3516f8a_0    conda-forge
libtasn1                  4.19.0               h166bdaf_0    conda-forge
libtiff                   4.6.0                h29866fb_1    conda-forge
libunistring              0.9.10               h7f98852_0    conda-forge
libuuid                   2.38.1               h0b41bf4_0    conda-forge
libuv                     1.44.2               h166bdaf_0    conda-forge
libva                     2.20.0               hd590300_0    conda-forge
libvorbis                 1.3.7                h9c3ff4c_0    conda-forge
libvpx                    1.13.1               h59595ed_0    conda-forge
libwebp-base              1.3.2                hd590300_0    conda-forge
libxcb                    1.15                 h0b41bf4_0    conda-forge
libxkbcommon              1.6.0                h5d7e998_0    conda-forge
libxml2                   2.11.5               h232c23b_1    conda-forge
libzlib                   1.2.13               h166bdaf_4    conda-forge
libzopfli                 1.0.3                h9c3ff4c_0    conda-forge
llvmlite                  0.40.1          py311ha6695c7_0    conda-forge
lz4-c                     1.9.4                hcb278e6_0    conda-forge
mako                      1.2.4              pyhd8ed1ab_0    conda-forge
markupsafe                2.1.3           py311h459d7ec_0    conda-forge
matplotlib                3.8.0           py311h38be061_1    conda-forge
matplotlib-base           3.8.0           py311h54ef318_1    conda-forge
matplotlib-inline         0.1.6              pyhd8ed1ab_0    conda-forge
mistune                   2.0.5              pyhd8ed1ab_0    conda-forge
mpc                       1.3.1                hfe3b2da_0    conda-forge
mpfr                      4.2.0                hb012696_0    conda-forge
mpg123                    1.32.3               h59595ed_0    conda-forge
mpmath                    1.3.0              pyhd8ed1ab_0    conda-forge
munkres                   1.1.4              pyh9f0ad1d_0    conda-forge
mysql-common              8.0.33               hf1915f5_5    conda-forge
mysql-libs                8.0.33               hca2cd23_5    conda-forge
nbclassic                 1.0.0              pyhb4ecaf3_1    conda-forge
nbclient                  0.8.0              pyhd8ed1ab_0    conda-forge
nbconvert                 7.4.0              pyhd8ed1ab_0    conda-forge
nbconvert-core            7.4.0              pyhd8ed1ab_0    conda-forge
nbconvert-pandoc          7.4.0              pyhd8ed1ab_0    conda-forge
nbformat                  5.9.0              pyhd8ed1ab_0    conda-forge
nbgitpuller               1.2.0              pyhd8ed1ab_0    conda-forge
nbval                     0.9.6              pyh9f0ad1d_0    conda-forge
ncurses                   6.4                  hcb278e6_0    conda-forge
nest-asyncio              1.5.6              pyhd8ed1ab_0    conda-forge
nettle                    3.8.1                hc379101_1    conda-forge
networkx                  3.1                pyhd8ed1ab_0    conda-forge
nodejs                    20.5.1               hb753e55_1    conda-forge
notebook                  7.0.4              pyhd8ed1ab_0    conda-forge
notebook-shim             0.2.3              pyhd8ed1ab_0    conda-forge
nspr                      4.35                 h27087fc_0    conda-forge
nss                       3.94                 h1d7d5a4_0    conda-forge
numba                     0.57.1          py311h96b013e_0    conda-forge
numpy                     1.24.4          py311h64a7726_0    conda-forge
oauthlib                  3.2.2              pyhd8ed1ab_0    conda-forge
ocl-icd                   2.3.1                h7f98852_0    conda-forge
ocl-icd-system            1.0.0                         1    conda-forge
opencv                    4.8.1           py311h38be061_1    conda-forge
openh264                  2.3.1                hcb278e6_2    conda-forge
openjpeg                  2.5.0                h488ebb8_3    conda-forge
openssl                   3.1.3                hd590300_0    conda-forge
overrides                 7.4.0              pyhd8ed1ab_0    conda-forge
p11-kit                   0.24.1               hc5aa10d_0    conda-forge
packaging                 23.1               pyhd8ed1ab_0    conda-forge
pamela                    1.0.0                      py_0    conda-forge
pandas                    2.1.1           py311h320fe9a_1    conda-forge
pandoc                    2.19.2               h32600fe_2    conda-forge
pandocfilters             1.5.0              pyhd8ed1ab_0    conda-forge
parso                     0.8.3              pyhd8ed1ab_0    conda-forge
patsy                     0.5.3              pyhd8ed1ab_0    conda-forge
pcre2                     10.40                hc3806b6_0    conda-forge
pexpect                   4.8.0              pyh1a96a4e_2    conda-forge
pickleshare               0.7.5                   py_1003    conda-forge
pillow                    10.0.1          py311h8aef010_1    conda-forge
pip                       23.1.2             pyhd8ed1ab_0    conda-forge
pixman                    0.42.2               h59595ed_0    conda-forge
pkgutil-resolve-name      1.3.10             pyhd8ed1ab_0    conda-forge
platformdirs              3.5.1              pyhd8ed1ab_0    conda-forge
pluggy                    1.3.0              pyhd8ed1ab_0    conda-forge
ply                       3.11                       py_1    conda-forge
prometheus_client         0.17.0             pyhd8ed1ab_0    conda-forge
prompt-toolkit            3.0.38             pyha770c72_0    conda-forge
prompt_toolkit            3.0.38               hd8ed1ab_0    conda-forge
psutil                    5.9.5           py311h2582759_0    conda-forge
pthread-stubs             0.4               h36c2ea0_1001    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
pugixml                   1.13                 h59595ed_1    conda-forge
pulseaudio-client         16.1                 hb77b528_5    conda-forge
pure_eval                 0.2.2              pyhd8ed1ab_0    conda-forge
py-opencv                 4.8.1           py311h781c19f_1    conda-forge
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pygments                  2.15.1             pyhd8ed1ab_0    conda-forge
pyjwt                     2.7.0              pyhd8ed1ab_0    conda-forge
pyopenssl                 23.2.0             pyhd8ed1ab_1    conda-forge
pyparsing                 3.1.1              pyhd8ed1ab_0    conda-forge
pyqt                      5.15.9          py311hf0fb5b6_5    conda-forge
pyqt5-sip                 12.12.2         py311hb755f60_5    conda-forge
pyrsistent                0.19.3          py311h2582759_0    conda-forge
pysocks                   1.7.1              pyha2e5f31_6    conda-forge
pytest                    7.4.2              pyhd8ed1ab_0    conda-forge
python                    3.11.6          hab00c5b_0_cpython    conda-forge
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python-fastjsonschema     2.17.1             pyhd8ed1ab_0    conda-forge
python-json-logger        2.0.7              pyhd8ed1ab_0    conda-forge
python-tzdata             2023.3             pyhd8ed1ab_0    conda-forge
python_abi                3.11                    3_cp311    conda-forge
pytz                      2023.3             pyhd8ed1ab_0    conda-forge
pywavelets                1.4.1           py311h1f0f07a_1    conda-forge
pyyaml                    6.0             py311hd4cff14_5    conda-forge
pyzmq                     25.1.0          py311h75c88c4_0    conda-forge
qt-main                   5.15.8              hc47bfe8_16    conda-forge
rav1e                     0.6.6                he8a937b_2    conda-forge
readline                  8.2                  h8228510_1    conda-forge
requests                  2.31.0             pyhd8ed1ab_0    conda-forge
rfc3339-validator         0.1.4              pyhd8ed1ab_0    conda-forge
rfc3986-validator         0.1.1              pyh9f0ad1d_0    conda-forge
ruamel.yaml               0.17.31         py311h459d7ec_0    conda-forge
ruamel.yaml.clib          0.2.7           py311h2582759_1    conda-forge
scikit-image              0.21.0          py311hb755f60_0    conda-forge
scikit-learn              1.3.1           py311hc009520_1    conda-forge
scipy                     1.11.3          py311h64a7726_1    conda-forge
send2trash                1.8.2              pyh41d4057_0    conda-forge
setuptools                67.7.2             pyhd8ed1ab_0    conda-forge
sip                       6.7.11          py311hb755f60_1    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
snappy                    1.1.10               h9fff704_0    conda-forge
sniffio                   1.3.0              pyhd8ed1ab_0    conda-forge
soupsieve                 2.3.2.post1        pyhd8ed1ab_0    conda-forge
sqlalchemy                2.0.15          py311h459d7ec_0    conda-forge
stack_data                0.6.2              pyhd8ed1ab_0    conda-forge
statsmodels               0.14.0          py311h1f0f07a_2    conda-forge
svt-av1                   1.7.0                h59595ed_0    conda-forge
sympy                     1.12            pypyh9d50eac_103    conda-forge
tbb                       2021.10.0            h00ab1b0_1    conda-forge
terminado                 0.17.1             pyh41d4057_0    conda-forge
threadpoolctl             3.2.0              pyha21a80b_0    conda-forge
tifffile                  2023.9.26          pyhd8ed1ab_0    conda-forge
tinycss2                  1.2.1              pyhd8ed1ab_0    conda-forge
tk                        8.6.13               h2797004_0    conda-forge
toml                      0.10.2             pyhd8ed1ab_0    conda-forge
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
tornado                   6.3.2           py311h459d7ec_0    conda-forge
traitlets                 5.9.0              pyhd8ed1ab_0    conda-forge
typing-extensions         4.6.3                hd8ed1ab_0    conda-forge
typing_extensions         4.6.3              pyha770c72_0    conda-forge
typing_utils              0.1.0              pyhd8ed1ab_0    conda-forge
tzdata                    2023c                h71feb2d_0    conda-forge
urllib3                   2.0.3              pyhd8ed1ab_0    conda-forge
vdom                      0.6                        py_0    conda-forge
watermark                 2.4.3              pyhd8ed1ab_0    conda-forge
wcwidth                   0.2.6              pyhd8ed1ab_0    conda-forge
webencodings              0.5.1                      py_1    conda-forge
websocket-client          1.5.2              pyhd8ed1ab_0    conda-forge
wheel                     0.40.0             pyhd8ed1ab_0    conda-forge
widgetsnbextension        4.0.7              pyhd8ed1ab_0    conda-forge
x264                      1!164.3095           h166bdaf_2    conda-forge
x265                      3.5                  h924138e_3    conda-forge
xcb-util                  0.4.0                hd590300_1    conda-forge
xcb-util-image            0.4.0                h8ee46fc_1    conda-forge
xcb-util-keysyms          0.4.0                h8ee46fc_1    conda-forge
xcb-util-renderutil       0.3.9                hd590300_1    conda-forge
xcb-util-wm               0.4.1                h8ee46fc_1    conda-forge
xkeyboard-config          2.40                 hd590300_0    conda-forge
xorg-fixesproto           5.0               h7f98852_1002    conda-forge
xorg-inputproto           2.3.2             h7f98852_1002    conda-forge
xorg-kbproto              1.0.7             h7f98852_1002    conda-forge
xorg-libice               1.1.1                hd590300_0    conda-forge
xorg-libsm                1.2.4                h7391055_0    conda-forge
xorg-libx11               1.8.6                h8ee46fc_0    conda-forge
xorg-libxau               1.0.11               hd590300_0    conda-forge
xorg-libxdmcp             1.1.3                h7f98852_0    conda-forge
xorg-libxext              1.3.4                h0b41bf4_2    conda-forge
xorg-libxfixes            5.0.3             h7f98852_1004    conda-forge
xorg-libxi                1.7.10               h7f98852_0    conda-forge
xorg-libxrender           0.9.11               hd590300_0    conda-forge
xorg-renderproto          0.11.1            h7f98852_1002    conda-forge
xorg-xextproto            7.3.0             h0b41bf4_1003    conda-forge
xorg-xf86vidmodeproto     2.3.1             h7f98852_1002    conda-forge
xorg-xproto               7.0.31            h7f98852_1007    conda-forge
xyzservices               2023.10.0          pyhd8ed1ab_0    conda-forge
xz                        5.2.6                h166bdaf_0    conda-forge
y-py                      0.5.9           py311hfe55011_0    conda-forge
yaml                      0.2.5                h7f98852_2    conda-forge
ypy-websocket             0.8.2              pyhd8ed1ab_0    conda-forge
zeromq                    4.3.4                h9c3ff4c_1    conda-forge
zfp                       1.0.0                h59595ed_4    conda-forge
zipp                      3.15.0             pyhd8ed1ab_0    conda-forge
zlib                      1.2.13               h166bdaf_4    conda-forge
zlib-ng                   2.0.7                h0b41bf4_0    conda-forge
zstd                      1.5.5                hfc55251_0    conda-forge
Configuration
# jupyterhub_config.py
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@alperyilmaz
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When I start jupyterlab in binder for the Git Environment Repo (binder link) I go to terminal and I try to run gitpuller with Git Content Repo URL and I get the following error:

$ gitpuller https://github.com/alperyilmaz/jupyterlab-python-intro
$ git fetch

fatal: ambiguous argument '..origin/master': unknown revision or path not in the working tree.
Use '--' to separate paths from revisions, like this:
'git <command> [<revision>...] -- [<file>...]'
Traceback (most recent call last):
  File "/srv/conda/envs/notebook/bin/gitpuller", line 10, in <module>
    sys.exit(main())
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/nbgitpuller/pull.py", line 361, in main
    for line in GitPuller(
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/nbgitpuller/pull.py", line 144, in pull
    yield from self.update()
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/nbgitpuller/pull.py", line 324, in update
    yield from self.rename_local_untracked()
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/nbgitpuller/pull.py", line 248, in rename_local_untracked
    new_upstream_files = self.find_upstream_changed('A')
  File "/srv/conda/envs/notebook/lib/python3.10/site-packages/nbgitpuller/pull.py", line 208, in find_upstream_changed
    output = subprocess.check_output([
  File "/srv/conda/envs/notebook/lib/python3.10/subprocess.py", line 421, in check_output
    return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
  File "/srv/conda/envs/notebook/lib/python3.10/subprocess.py", line 526, in run
    raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['git', 'diff', '..origin/master', '--name-status']' returned non-zero exit status 128.

Am I using gitpuller wrong? Is there a way to check if nbgitpuller is working fine or not? How can I overcome this problem, I'm using MyBinder for teaching and as of now my notebooks are not working. I'd appreciate if you can help me troubleshoot the problem.

@alperyilmaz
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alperyilmaz commented Oct 10, 2023

Since everything was working fine 1 year ago, I wanted to test earlier versions of some packages.

I generated alperyilmaz/gitpuller-test-binder repo as Environment Repo to test the issue. First I tried the older version of nbgitpuller, I used the following environment.yml

channels:
  - conda-forge
dependencies:
  - nbgitpuller==1.0.2

When I run Binder on the Environment Repo MyBinder Link, gitpuller works fine in terminal. (it can pull the git repo)

If I try to git pull a content repo MyBinder Link I get 404.

Then I thought maybe the problem is not nbgitpuller but jupyterlab itself. So, I installed an earlier version (roughly one year ago, everything was running without problems). So, here's the updated environment.yml file

channels:
  - conda-forge
dependencies:
  - nbgitpuller==1.0.2
  - jupyterlab==3.4.4

And, no luck. Still getting 404 if I want to pull a content repo.

Then I thought, is this a problem about MyBinder site? So I found someone else's repo which uses nbgitpuller. I tried their "launch binder" button link and I saw 404 again!

What's going on? What should I troubleshoot next? It has been around 8 hrs I'm struggling with this issue. I'm trying to troubleshoot but I'm failing all the time.

@fomightez
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fomightez commented Oct 11, 2023

@alperyilmaz -- It is probably something you cannot fix yourself. If you used the same URL as before and you've found other examples you knew to work that now don't, then it is probably an issue in how repo2docker installs something necessary for that to work or about how the proxy server involved or URL parsing works, or doesn't in this case, on the public binderhubs currently.
I know that use of RStudio in newly built images is also being problematic from MyBinder sessions (see here), which involves the some of the same plumbing, and so it makes me suspect that. But the two could be totally unrelated.

There's a lot of infrastructure that runs MyBinder sessions that you cannot control. For troubleshooting it can be a challenge to keep track of what you may be able to fix and not.

UPDATE: Someone also just reported notebooks with parameters in the URL not working for MyBinder launches succesffuly and this may all be related, too. See 'Nb on binder with parameters now resulting in 404' here.

@yuvipanda
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@fomightez
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It being that subtle, lead me to investigate the case of opening RStudio from MyBinder launches further. I noticed an extra :80 is getting added near the beginning of the URL that shouldn't be there. I stumbled into a hacky workaround for now that I posted as an update at the bottom of here.

@manics
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manics commented Oct 11, 2023

https://discourse.jupyter.org/t/nb-on-binder-with-parameters-now-resulting-in-404/21860 says it last worked on 2023-10-09, so I suspect jupyterhub/binderhub#1758 (edited, wrong PR), which was deployed two days ago in jupyterhub/mybinder.org-deploy#2770 might need another tweak.

@yuvipanda
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@fomightez @alperyilmaz I've reverted the change I helped deployed a couple days ago, does that fix your issue for now?

@fomightez
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Yay! That fixes the issues with nbparams and nbgitpuller. I'm still seeing failure to launch into RStudio directly, or even switch to RStudio from the JupyterLab launcher tile, unless you do some acrobatics. Though going to RStudio may not quite be related to what broke those two, even though the URL encoding does seem to play a part.

@alperyilmaz
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alperyilmaz commented Oct 12, 2023 via email

@yuvipanda
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@alperyilmaz @fomightez we've redeployed the original change, with a fix (jupyterhub/binderhub#1774). Your link continues to work for me! Can you try it out and let me know if you have problems?

We're working on cleaning up the binderhub frontend code, and making it more robust (adding unit tests, refactoring, type checks, etc). This break was unfortunately a side effect of that, but hopefully the added tests and robustness will make things better in the long run - you'll see that the fix PR has more lines of test than fix!

Thank you for your patience and continuing to use mybinder.org :) And thanks to @consideRatio and @manics for helping fix this!

@alperyilmaz
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@yuvipanda my link works! thanks for your time and effort..

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4 participants