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1. jzhoulab/puffin jzhoulab/puffin Public

   deep learning-inspired explainable sequence model for transcription initiation

   Python 82 6

2. jzhoulab/orca jzhoulab/orca Public

   sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale

   Python 73 21

3. jzhoulab/ddsm jzhoulab/ddsm Public

   Dirichlet Diffusion Score Model for Biological Sequence Generation.

   Jupyter Notebook 45 7

4. FunctionLab/sei-framework FunctionLab/sei-framework Public

   code to run sei and obtain sei and sequence class predictions

   Python 90 6

5. FunctionLab/selene FunctionLab/selene Public

   a framework for training sequence-level deep learning networks

   Jupyter Notebook 373 87

6. FunctionLab/ExPecto FunctionLab/ExPecto Public

   predicting expression effects of human genome variants ab initio from sequence

   Python 117 41