Mayo Clinic - STRIP AI (mcsai)

mcsai is a bash cli for the Image Classification of Stroke Blood Clot Origin kaggle competition based on abcli - to see list of mcsai commands type in:

mcsai help

mcsai dataset download metadata/object_1
 . download object_1/metadata from mcsai dataset.
mcsai dataset list [count=10]
 . list [first 10 files in] mcsai dataset.
mcsai install
 . install mcsai.
mcsai notebook open
 . open mcsai notebook.
mcsai validate
 . validate mcsai.

example 1

purpose: download a few files from the dataset and access them in OpenSlide - based on this notebook.

first install and validate mcsai:

mcsai install
mcsai validate

you should see openslide-1.2.0 or higher.

now review the names of the first 10 files in the dataset:

mcsai dataset list count=10

then download a few of them:

abcli select
mcsai dataset download metadata
mcsai dataset download other/04414e_0.tif
mcsai notebook open

openslide.ipynb should be up and running. 🚀

/END