Skip to content

Commit

Permalink
Merge pull request #85 from Redmar-van-den-Berg/master
Browse files Browse the repository at this point in the history
Discrepancy between the wget commands and the srst2 command line.
  • Loading branch information
katholt committed Sep 10, 2017
2 parents 313809b + 466a6f5 commit 3a0d065
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion README.md
Expand Up @@ -875,7 +875,7 @@ wget ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/ERR178148/ERR178148_2.fastq.gz
wget ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/ERR178156/ERR178156_1.fastq.gz
wget ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR178/ERR178156/ERR178156_2.fastq.gz
srst2 --input_pe ERR178156*.fastq.gz ERR124656*.fastq.gz --output serotypes --log --gene_db EcOH.fasta
srst2 --input_pe ERR178148*.fastq.gz ERR178156*.fastq.gz --output serotypes --log --gene_db EcOH.fasta
```

Results will be output in: `[prefix]__genes__EcOH__results.txt`
Expand Down

0 comments on commit 3a0d065

Please sign in to comment.