VFDB database problem

[aslangabriel]

I have followed all the instructions, however all the py scripts prompt error"line 9, in
from Bio import SeqIO ImportError: No module named Bio" Could you help me to handle this problem

[katholt]

Bio is a module within BioPython - sounds like you just need to install BioPython correctly

[aslangabriel]

Thank you. I‘ll give it a go Kat Holt <notifications@github.com> 于2019年1月21日周一 下午9:21写道：

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Bio is a module within BioPython - sounds like you just need to install BioPython correctly — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#114 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AsvLUD9FiUUCn8gA05o2cC9sLVLkEpBPks5vFoOigaJpZM4aL25R> .

-- Dr. Qi Feng College of Life Sciences Nanjing Normal University 1 Wenyuan Road 210046 Nanjing P.R. China

[aslangabriel]

I'm sorry to trouble you again. There's anther problem which is described as follows"(base) qifeng@ubuntu:~$ python mybin/VFDB_cdhit_to_csv.py --cluster_file Salmonella_cdhit90.clstr --infile Salmonella.fsa --outfile Salmonella_cdhit90.csv Traceback (most recent call last): File "mybin/VFDB_cdhit_to_csv.py", line 68, in <module> sys.exit(main()) File "mybin/VFDB_cdhit_to_csv.py", line 29, in main outfile = file(args.outfile,"w") NameError: name 'file' is not defined " Qi Feng <luckystar204@gmail.com> 于2019年1月21日周一 下午9:23写道：

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Thank you. I‘ll give it a go Kat Holt ***@***.***> 于2019年1月21日周一 下午9:21写道： > Bio is a module within BioPython - sounds like you just need to install > BioPython correctly > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub > <#114 (comment)>, or mute > the thread > <https://github.com/notifications/unsubscribe-auth/AsvLUD9FiUUCn8gA05o2cC9sLVLkEpBPks5vFoOigaJpZM4aL25R> > . > -- Dr. Qi Feng College of Life Sciences Nanjing Normal University 1 Wenyuan Road 210046 Nanjing P.R. China

-- Dr. Qi Feng College of Life Sciences Nanjing Normal University 1 Wenyuan Road 210046 Nanjing P.R. China