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1. UltraQuant UltraQuant Public

   MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters

   26 3

2. BarcodeBabel BarcodeBabel Public

   Peptide barcode libraries for electrospray mass spectometry proteomics

   Jupyter Notebook

3. ProteomeGenerator2 ProteomeGenerator2 Public

   Precise, genome-scale, personalized, and sample-specific proteogenomic analysis

   Perl 7 5

4. ProteoModlR ProteoModlR Public

   R Suite for Quantitative Proteomics Pathway Modeling, as published in Cifani et al BMC Bioinformatics 2017

   R 1 1

5. P5BrainReorg P5BrainReorg Public

   Forked from soccin/P5BrainReorg

   Recurrence analysis of polyclonal somatic DNA rearrangements

   R

6. seqCNA_tazemetostat_resistance seqCNA_tazemetostat_resistance Public

   Forked from soccin/seqCNA

   Copy number analysis of shallow whole genome sequencing

   R