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Pinned repositories

  1. Rhabdoid_PGBD5_MSK_paper

    Forked from JialiUMassWengLab/Rhabdoid_PGBD5_MSK_paper

    Scripts used in analysis "PGBD5 promotes site-specific oncogenic mutations in human tumors" as published in Henssen et al Nature Genetics 2017

    Perl 2

  2. ChromoViz

    Forked from elzbth/ChromoViz

    visualize genomic data - explore structural variations and easily compare samples visually, as reported in Henssen et al Elife 2015


  3. ProteoModlR

    R Suite for Quantitative Proteomics Pathway Modeling, as published in Cifani et al BMC Bioinformatics 2017

    R 1

  4. R-script-for-XLMS-data-analysis

    R script that concatenates txt output files from XlinkX, Proteome Discoverer. Targets a specific protein of interest to arrange cross-links and removes duplicates and output resultant txt file of c…

    R 1

  5. TargetInductionFailure

    Python code for aggregating and filtering whole-genome and mRNA sequencing data, as published in "Genetic mechanisms of primary chemotherapy resistance in pediatric acute myeloid leukemia: A report…


  6. UltraQuant

    MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters

    3 1

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October 2018

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