v0.2.0

Welcome to Cytomulate v0.2.0! Hooray! We are not only bringing documentation enhancements, but we
are also introducing a new feature for more accurate simulations!

Changes and New Features

• The utilities.univariate_noise_model() method:
  • Added half_normal option to the noise_distribution parameter
  • Changed the default noise_distribution to uniform (This is a breaking change because of the benefits to simulated results).
  • A warning is given when no user-specified noise_distribution is supplied to warn the breaking change
• Added the utilities.estimate_noise_model() method to estimate the noise present in the data
• Added a built-in estimation procedure to match the amount of zeroes observed in the dataset

Improvements

• Added 4 more detailed tutorials on our documentation website
• Improved docstrings with more details on key parameters
• Updated the latest references and links

v0.1.1

This is our first maintenance update to be released to v0.1.x,
and we are packing in lots of enhancements! All changes are
regarding documentations!

Improvements

• Added 4 more detailed tutorials on our documentation website
• Improved docstrings with more details on key parameters
• Updated the latest references and links

Benchmark Analysis Codes (rev. 1)

This release contains source codes used to reproduce the results in our paper. For a detailed documentation on how to use these codes, please read our documentation here!

Note: This is not intended as a release of the Cytomulate software itself. For Cytomulate, please follow the releases named v.X.X.X as well as PyPI and conda releases.

v0.1.0

Our FIRST OFFICIAL RELEASE is here! From now on, all our releases will be supported with our standard support cycle. Here you will find our release notes.

Changes and New Features

• Added Command-Line Interface with support for complex simulations
• Improved docstrings
• Improved documentations with tutorials

From Pre-release

These are listed for documentation reasons for the first official release.

• Support for Emulation Mode and Creation Mode
• Support for complex simulations
• Availability on PyPI and conda

v0.0.2

Release Notes:

• This is the first stable pre-release of cytomulate 🎉🎊🥳
• A fix for critical installation error from v0.0.1.
• Availability on PyPI and conda.

Known Issues:

None!

Notes:

• v0.0.1 on PyPI is broken! Use this version instead!