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fix the oneliner bug
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kexinhuang12345 committed Nov 2, 2020
1 parent afc7cd8 commit fde5b0c
Showing 1 changed file with 3 additions and 25 deletions.
28 changes: 3 additions & 25 deletions DeepPurpose/oneliner.py
Original file line number Diff line number Diff line change
Expand Up @@ -235,39 +235,17 @@ def virtual_screening(target, X_repurpose = None,
# load 6 pretrained model
print('Beginning Downloading Pretrained Model...')
print('Note: if you have already download the pretrained model before, please stop the program and set the input parameter \'pretrained_dir\' to the path')
url = 'https://deeppurpose.s3.amazonaws.com/pretrained_models.zip'
if not os.path.exists(os.path.join(save_dir, 'pretrained_models')):
os.mkdir(os.path.join(save_dir, 'pretrained_models'))

pretrained_dir = os.path.join(save_dir, 'pretrained_models')
pretrained_dir_ = wget.download(url, pretrained_dir)

print('Downloading finished... Beginning to extract zip file...')
with ZipFile(pretrained_dir_, 'r') as zip:
zip.extractall(path = pretrained_dir)
print('Pretrained Models Successfully Downloaded...')
pretrained_dir = os.path.join(pretrained_dir, 'DeepPurpose_BindingDB')
pretrained_dir = download_pretrained_model('pretrained_models')
elif pretrained == False:
print('Beginning Downloading Configs Files for training from scratch...')
url = 'https://deeppurpose.s3.amazonaws.com/models_configs.zip'
if not os.path.exists(os.path.join(save_dir, 'models_configs')):
os.mkdir(os.path.join(save_dir, 'models_configs'))

pretrained_dir = os.path.join(save_dir, 'models_configs')
pretrained_dir_ = wget.download(url, pretrained_dir)

print('Downloading finished... Beginning to extract zip file...')
with ZipFile(pretrained_dir_, 'r') as zip:
zip.extractall(path = pretrained_dir)
print('Configs Models Successfully Downloaded...')
pretrained_dir = os.path.join(pretrained_dir, 'models_configs')
pretrained_dir = download_pretrained_model('models_configs')
else:
print('Checking if pretrained directory is valid...')
if not os.path.exists(pretrained_dir):
print('The directory to pretrained model is not found. Please double check, or download it again by setting the input parameter \'pretrained_dir\' to be \'None\'')
else:
print('Beginning to load the pretrained models...')

if train_drug is None:

print('Using pretrained model and making predictions...')
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