BaysorAnalysis

Analysis for the Baysor paper. See the Baysor package and the pre-print.

This code base is using the Julia Language and DrWatson.

To (locally) reproduce this project, do the following:

1. Download this code base. Notice that raw data are typically not included in the git-history and may need to be downloaded independently.
2. Open a Julia console and do:

   julia> using Pkg
   julia> Pkg.activate("path/to/this/project")
   julia> Pkg.instantiate()
   

This will install all necessary packages for you to be able to run the scripts.

Visualization of the results

• Allen sm-FISH
• ISS
• MERFISH
• osmFISH
• STARmap 1020
• STARmap_160