Ensuring test fixtures are avail during publish (#32)

kidsneuro-lab · Jan 23, 2024 · 31d4ba0 · 31d4ba0
1 parent 72c139b
commit 31d4ba0
Showing 1 changed file with 10 additions and 0 deletions.
diff --git a/.github/workflows/publish_to_dockerhub.yml b/.github/workflows/publish_to_dockerhub.yml
@@ -16,9 +16,19 @@ jobs:
 
     steps:
     - uses: actions/checkout@v3
+
+    - name: Download refGene (sample dataset for tests)
+      run: ./download_refGene.sh -hg38_sample
 
     - name: Run tests
       run: ./run-tests.sh
+
+    - name: Cleanup
+      run: |
+        echo "Removing test fixtures"
+        rm -f tests/fixtures/Homo_sapiens.GRCh38.dna.chromosome.X.fa*
+        rm -f tests/fixtures/genes.refGene
+        rm -f tests/fixtures/LRG_RefSeqGene
     
     - name: Download refGene
       run: ./download_refGene.sh -hg38