Build error should be fixed

kieranrcampbell · Feb 6, 2019 · 9f8d6b5 · 9f8d6b5
1 parent 8502e14
commit 9f8d6b5
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Showing 6 changed files with 38 additions and 2 deletions.
diff --git a/.Rbuildignore b/.Rbuildignore
@@ -0,0 +1,4 @@
+^Meta$
+^doc$
+^.*\.Rproj$
+^\.Rproj\.user$
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -23,7 +23,11 @@ Suggests:
   testthat,
   cowplot,
   tidyr,
-  SingleCellExperiment
+  SingleCellExperiment,
+  GenomicRanges,
+  matrixStats,
+  org.Hs.eg.db,
+  TxDb.Hsapiens.UCSC.hg19.knownGene
 biocViews:
   Software, 
   Transcriptomics, 

diff --git a/R/clonealign.R b/R/clonealign.R
@@ -275,6 +275,15 @@ print.clonealign_fit <- function(x, ...) {
 #' data(example_sce)
 "example_sce"
 
+#' Example raw copy number data
+#'
+#' An example data frame with copy number calls by
+#' region for three clones (A, B, C)
+#'
+#' @examples
+#' data(df_cnv)
+"df_cnv"
+
 
 #' Example clonealign_fit
 #'

diff --git a/data/df_cnv.rda b/data/df_cnv.rda
diff --git a/man/df_cnv.Rd b/man/df_cnv.Rd
diff --git a/vignettes/preparing_copy_number_data.Rmd b/vignettes/preparing_copy_number_data.Rmd
@@ -28,7 +28,8 @@ knitr::opts_chunk$set(
 
 suppressPackageStartupMessages({
   library(SummarizedExperiment)
-  library(tidyverse)
+  library(dplyr)
+  library(tidyr)
   library(clonealign)
   library(TxDb.Hsapiens.UCSC.hg19.knownGene)
   library(org.Hs.eg.db)