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Update dev environment for Kustomize
In 514091a the k8s namespace resource got moved to a kustomization. This requires running `kubectl apply` with the `-k` flag instead of `-f`, otherwise the namespace doesn't get created and `inv dev-env` exits with an error. We copy the entire `manifests/` directory to a temporary directory to keep the code DRY and accommodate future changes to the kustomization. YAML files which aren't mentioned in `kustomization.yaml` aren't applied when using `-k`, so we can safely apply the entire manifests directory.
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