add scBasset model to model zoo #318
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added 2 commits
May 19, 2022 17:45
haimasree
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May 20, 2022
| dependencies: | ||
| conda: | ||
| - python=3.7 | ||
| - tensorflow==2.6.0 |
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It should be tensorflow=2.6.0. Since the tests are passing anyway, I 'd say never mind. Just for future reference :)
bytewife
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add scBasset model to model zoo
bytewife
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Feb 1, 2024
add scBasset model to model zoo
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Hi developers of kipoi,
We developed scBasset, a sequence-based CNN method to model scATAC data. This method is an extension of the Basset architecture to scATAC application. See preprint here: (https://www.biorxiv.org/content/10.1101/2021.09.08.459495v1) and the github repo here: (https://github.com/calico/scBasset)
Here we submit to the model zoo the scBasset model trained on Buenrostro2018 scATAC dataset on FACS sorted hematopoeitic populations (GSE96769). I performed kipoi test and it worked fine. I also add my own test script in the repo. See more detailed descriptions in the model.yaml file. Hope this will be useful to the community thanks!
Best,
Han Yuan and David Kelley