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EMBALMER v0.99.1b

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@GabeAl GabeAl released this 04 Feb 00:52
· 110 commits to master since this release
v0.99.1b
f12519a

See f12519a

Binaries for Linux, Mac, Windows available.

  • "Modern" computers are generally newer than 2011. They should have "AVX." These are the recommended versions (the filenames are uncontaminated with extra stuff).
  • "Older" computers are circa 2009 (the very first core-i7's). They should have "SSE4.2."
  • "Buzzard" computers are, well... newer than 2006 like the first "cores." They should have "SSSE3."
  • Even older computer? The code can compile for any 64-bit processor, but you're on your own (or contact me).

The GG_97 is a database for embalmer. You can also use plain multi-fastas without making a database. Also included is a taxonomy file. You should extract the database before using.

To see some of embalmer's features, you can use the DB and taxonomy file like so on some bacterial 16S reads:
embalm -r GG_97_S320_id97.edb -q MY_FASTA_QUERIES.fa -o alignments_tax_clustered.b6 -f -n -m CAPITALIST -b taxonomy.txt

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