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knights-lab

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  1. BURST BURST Public

    An ultrafast optimal aligner for mapping large NGS data to large genome databases.

    C 57 8

  2. SHOGUN SHOGUN Public

    SHallow shOtGUN profiler

    Python 54 19

  3. BugBase BugBase Public

    HTML 37 11

  4. MLRepo MLRepo Public

    R 34 13

  5. shi7 shi7 Public

    Auto-parameterizing QC Pipeline for Illumina sequencing runs

    Python 18 7

  6. dietstudy_analyses dietstudy_analyses Public

    R 11 9

Repositories

Showing 10 of 49 repositories
  • knights-lab.github.io Public

    Knights Lab website via Github pages

    knights-lab/knights-lab.github.io’s past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Oct 6, 2024
  • MAGICstudy Public

    The Microbiome, Antibiotics, and Growth Infant Cohort associated analyses.

    knights-lab/MAGICstudy’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 28, 2024
  • aKronyMer Public

    Ultrafast genome- and dataset-scale distance matrix and phylogenetic tree creation

    knights-lab/aKronyMer’s past year of commit activity
    C 1 1 0 0 Updated Jul 9, 2024
  • BURST Public

    An ultrafast optimal aligner for mapping large NGS data to large genome databases.

    knights-lab/BURST’s past year of commit activity
    C 57 AGPL-3.0 8 15 0 Updated Jul 9, 2024
  • UTree Public

    K-mer searching with trees

    knights-lab/UTree’s past year of commit activity
    C 4 AGPL-3.0 1 4 1 Updated Jul 9, 2024
  • shi7 Public

    Auto-parameterizing QC Pipeline for Illumina sequencing runs

    knights-lab/shi7’s past year of commit activity
    Python 18 AGPL-3.0 7 9 0 Updated Jul 9, 2024
  • climate-trace-shipping Public
    knights-lab/climate-trace-shipping’s past year of commit activity
    Jupyter Notebook 2 MIT 1 0 0 Updated Dec 1, 2023
  • LMdist Public

    LMdist is an unsupervised algorithm for correcting oversaturated pairwise distance and dissimilarity measures. Compatible with any pairwise beta diversity measure, LMdist will uncover underlying environmental gradients and resolve arches/horseshoes in ordination.

    knights-lab/LMdist’s past year of commit activity
    R 5 AGPL-3.0 0 0 0 Updated Nov 7, 2023
  • BetaDiv Public

    Materials and analyses for "Microbiome beta diversity analyses and visualization." A discussion of beta diversity analysis methods, factors we must consider in each step, and how we might better use these methods in forthcoming microbiome research.

    knights-lab/BetaDiv’s past year of commit activity
    R 0 0 0 0 Updated Mar 2, 2023
  • NINJA-utils Public

    Reusable classes and configurations for easy Python package development.

    knights-lab/NINJA-utils’s past year of commit activity
    Python 1 GPL-2.0 1 0 0 Updated Aug 9, 2022
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