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@koesterlab

Bioinformatics and Computational Oncology (Koesterlab)

The research group of Johannes Köster

Popular repositories Loading

  1. microphaser microphaser Public

    Rust 12 2

  2. setup-slurm-action setup-slurm-action Public

    A github action to setup a small SLURM cluster for testing purposes.

    8

  3. fp-rust-wavelet-trees fp-rust-wavelet-trees Public

    Rust 7

  4. data-science-for-bioinfo data-science-for-bioinfo Public

    A collection of resources for data scientists (not only) in bioinformatics

    6 2

  5. calfreeslots calfreeslots Public

    A small command line utility for printing free calendar slots in the coming days

    Python 5

  6. nanopore-qc nanopore-qc Public

    A quality control pipeline for Oxford Nanopore sequencing

    Python 3

Repositories

Showing 10 of 31 repositories
  • srptn Public

    SeRPentine - the Snakemake research platform

    koesterlab/srptn’s past year of commit activity
    Python 1 0 0 0 Updated Sep 10, 2024
  • ngs-test-data Public Forked from snakemake-workflows/ngs-test-data

    A workflow for creating small NGS test data sets, useful for continuous integration.

    koesterlab/ngs-test-data’s past year of commit activity
    Python 0 MIT 14 0 0 Updated Aug 21, 2024
  • koesterlab.github.io Public
    koesterlab/koesterlab.github.io’s past year of commit activity
    HTML 0 0 0 0 Updated Aug 20, 2024
  • teaching-data-analysis-visualization-reproducibility Public

    Course on data analysis, visualization and reproducibility at the faculty of medicine

    koesterlab/teaching-data-analysis-visualization-reproducibility’s past year of commit activity
    Python 0 0 0 0 Updated Aug 19, 2024
  • rossi-ips-dmr Public

    Calling and plotting of differentially methylated regions between two or more biological samples in BAM format

    koesterlab/rossi-ips-dmr’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 15, 2024
  • locosopa Public

    A github action for creating software homepages with low code.

    koesterlab/locosopa’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Aug 10, 2024
  • koesterlab-workstation-ansible Public
    koesterlab/koesterlab-workstation-ansible’s past year of commit activity
    0 MIT 2 0 1 Updated Jul 17, 2024
  • data-science-for-bioinfo Public

    A collection of resources for data scientists (not only) in bioinformatics

    koesterlab/data-science-for-bioinfo’s past year of commit activity
    6 MIT 2 0 0 Updated Jun 14, 2024
  • conda-inject Public

    Helper functions for injecting a conda environment into the current python environment (by modifying sys.path, without actually changing the current python environment)

    koesterlab/conda-inject’s past year of commit activity
    Python 1 MIT 0 0 0 Updated May 27, 2024
  • setup-slurm-action Public

    A github action to setup a small SLURM cluster for testing purposes.

    koesterlab/setup-slurm-action’s past year of commit activity
    8 MIT 0 1 1 Updated Apr 15, 2024
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