Update README.md

README.md

@@ -1,4 +1,4 @@
-## [pymgpipe](https://korem-lab.github.io/pymgpipe/) | [![DOI](https://zenodo.org/badge/525586335.svg)](https://zenodo.org/badge/latestdoi/525586335) [![status](https://joss.theoj.org/papers/3f284f37987438428fd09ad3d5bd4871/status.svg)](https://joss.theoj.org/papers/3f284f37987438428fd09ad3d5bd4871) [![Python package](https://github.com/korem-lab/pymgpipe/actions/workflows/python-package.yml/badge.svg?branch=main)](https://github.com/korem-lab/pymgpipe/actions/workflows/python-package.yml) [![Tests](https://github.com/korem-lab/pymgpipe/actions/workflows/tests.yml/badge.svg?branch=main)](https://github.com/korem-lab/pymgpipe/actions/workflows/tests.yml) [![Docs](https://github.com/korem-lab/pymgpipe/actions/workflows/docs.yml/badge.svg)](https://github.com/korem-lab/pymgpipe/actions/workflows/docs.yml)  
+## [pymgpipe](https://korem-lab.github.io/pymgpipe/) | [![DOI](https://zenodo.org/badge/525586335.svg)](https://zenodo.org/badge/latestdoi/525586335) [![status](https://joss.theoj.org/papers/3f284f37987438428fd09ad3d5bd4871/status.svg)](https://joss.theoj.org/papers/3f284f37987438428fd09ad3d5bd4871) [![Python package](https://github.com/korem-lab/pymgpipe/actions/workflows/python-package.yml/badge.svg?branch=main)](https://github.com/korem-lab/pymgpipe/actions/workflows/python-package.yml) [![Tests](https://github.com/korem-lab/pymgpipe/actions/workflows/tests.yml/badge.svg?branch=main)](https://github.com/korem-lab/pymgpipe/actions/workflows/tests.yml) [![Docs](https://github.com/korem-lab/pymgpipe/actions/workflows/docs.yml/badge.svg)](https://github.com/korem-lab/pymgpipe/actions/workflows/docs.yml) [![PyPI version](https://badge.fury.io/py/pymgpipe.svg)](https://badge.fury.io/py/pymgpipe)  
 <!-- Pytest Coverage Comment:Begin -->
 <a href="https://github.com/korem-lab/pymgpipe/blob/main/README.md"><img alt="Coverage" src="https://img.shields.io/badge/Coverage-77%25-yellow.svg" /></a><details><summary>Coverage Report </summary><table><tr><th>File</th><th>Stmts</th><th>Miss</th><th>Cover</th><th>Missing</th></tr><tbody><tr><td colspan="5"><b>pymgpipe</b></td></tr><tr><td>&nbsp; &nbsp;<a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/coupling.py">coupling.py</a></td><td>39</td><td>6</td><td>85%</td><td><a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/coupling.py#L20">20</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/coupling.py#L43">43</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/coupling.py#L46-L47">46&ndash;47</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/coupling.py#L52">52</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/coupling.py#L67">67</a></td></tr><tr><td>&nbsp; &nbsp;<a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/diet.py">diet.py</a></td><td>103</td><td>19</td><td>82%</td><td><a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/diet.py#L16">16</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/diet.py#L22">22</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/diet.py#L396-L397">396&ndash;397</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/diet.py#L437-L453">437&ndash;453</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/diet.py#L466-L477">466&ndash;477</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/diet.py#L482-L485">482&ndash;485</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/diet.py#L494">494</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/diet.py#L496">496</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/diet.py#L525">525</a></td></tr><tr><td>&nbsp; &nbsp;<a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/fva.py">fva.py</a></td><td>144</td><td>59</td><td>59%</td><td><a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/fva.py#L32">32</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/fva.py#L36">36</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/fva.py#L88-L92">88&ndash;92</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/fva.py#L98">98</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/fva.py#L107-L113">107&ndash;113</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/fva.py#L116-L117">116&ndash;117</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/fva.py#L120-L121">120&ndash;121</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/fva.py#L139-L149">139&ndash;149</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/fva.py#L165">165</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/fva.py#L174-L235">174&ndash;235</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/fva.py#L244">244</a></td></tr><tr><td>&nbsp; &nbsp;<a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/io.py">io.py</a></td><td>106</td><td>37</td><td>65%</td><td><a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/io.py#L17">17</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/io.py#L55">55</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/io.py#L61-L66">61&ndash;66</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/io.py#L80-L81">80&ndash;81</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/io.py#L95-L96">95&ndash;96</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/io.py#L108">108</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/io.py#L111">111</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/io.py#L117-L120">117&ndash;120</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/io.py#L125-L133">125&ndash;133</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/io.py#L142">142</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/io.py#L146-L147">146&ndash;147</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/io.py#L152-L157">152&ndash;157</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/io.py#L161-L167">161&ndash;167</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/io.py#L176-L177">176&ndash;177</a></td></tr><tr><td>&nbsp; &nbsp;<a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/main.py">main.py</a></td><td>148</td><td>44</td><td>70%</td><td><a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/main.py#L112">112</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/main.py#L115">115</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/main.py#L167">167</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/main.py#L210-L212">210&ndash;212</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/main.py#L243-L297">243&ndash;297</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/main.py#L304">304</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/main.py#L309-L310">309&ndash;310</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/main.py#L323">323</a></td></tr><tr><td>&nbsp; &nbsp;<a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/metrics.py">metrics.py</a></td><td>24</td><td>21</td><td>12%</td><td><a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/metrics.py#L5-L35">5&ndash;35</a></td></tr><tr><td>&nbsp; &nbsp;<a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/modeling.py">modeling.py</a></td><td>145</td><td>7</td><td>95%</td><td><a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/modeling.py#L36">36</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/modeling.py#L39">39</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/modeling.py#L54-L57">54&ndash;57</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/modeling.py#L129">129</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/modeling.py#L131">131</a></td></tr><tr><td>&nbsp; &nbsp;<a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/nmpc.py">nmpc.py</a></td><td>64</td><td>5</td><td>92%</td><td><a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/nmpc.py#L95">95</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/nmpc.py#L132-L134">132&ndash;134</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/nmpc.py#L136">136</a></td></tr><tr><td>&nbsp; &nbsp;<a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/utils.py">utils.py</a></td><td>235</td><td>107</td><td>54%</td><td><a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/utils.py#L45-L46">45&ndash;46</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/utils.py#L49">49</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/utils.py#L52">52</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/utils.py#L67">67</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/utils.py#L73">73</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/utils.py#L83">83</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/utils.py#L87">87</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/utils.py#L102-L105">102&ndash;105</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/utils.py#L111">111</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/utils.py#L115-L117">115&ndash;117</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/utils.py#L120-L138">120&ndash;138</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/utils.py#L142-L152">142&ndash;152</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/utils.py#L160">160</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/utils.py#L173-L174">173&ndash;174</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/utils.py#L176-L177">176&ndash;177</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/utils.py#L199-L200">199&ndash;200</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/utils.py#L205-L207">205&ndash;207</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/utils.py#L245-L248">245&ndash;248</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/utils.py#L250-L264">250&ndash;264</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/utils.py#L270">270</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/utils.py#L281-L286">281&ndash;286</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/utils.py#L289-L293">289&ndash;293</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/utils.py#L313-L314">313&ndash;314</a>, <a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/utils.py#L325-L367">325&ndash;367</a></td></tr><tr><td colspan="5"><b>pymgpipe/tests</b></td></tr><tr><td>&nbsp; &nbsp;<a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/tests/test_e2e.py">test_e2e.py</a></td><td>90</td><td>1</td><td>99%</td><td><a href="https://github.com/korem-lab/pymgpipe/blob/main/pymgpipe/tests/test_e2e.py#L197">197</a></td></tr><tr><td><b>TOTAL</b></td><td><b>1309</b></td><td><b>306</b></td><td><b>77%</b></td><td>&nbsp;</td></tr></tbody></table></details>
 <!-- Pytest Coverage Comment:End -->