pixy is currently available for installation on Linux/OSX systems via conda-forge. You can install it using following two conda install commands:
conda install -c conda-forge pixy conda install -c bioconda htslib
You can test the installation by running:
pixy --help
Note
- For information on installing conda:
- anaconda (more features and initial modules): https://docs.anaconda.com/anaconda/install/ miniconda (lighter weight): https://docs.conda.io/en/latest/miniconda.html
Alternatively, you can clone from Github, with manual dependency installation: https://github.com/ksamuk/pixy