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kushalkolar committed Jul 15, 2020
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Expand Up @@ -26,20 +26,20 @@ pip install mesmerize
After installation simply call ``mesmerize`` from inside the virtual environment to launch it.

If you're unfamiliar with virtual environments, see the docs for more detailed instructions on all operating systems:
https://mesmerize.readthedocs.io/en/master/user_guides/installation.html
http://docs.mesmerizelab.org/en/master/user_guides/installation.html

#### Caiman
In order to use [CaImAn](https://github.com/flatironinstitute/CaImAn) features you will need to have [CaImAn](https://github.com/flatironinstitute/CaImAn) installed into your environment. See the Mesmerize installation instructions linked above for more details: https://mesmerize.readthedocs.io/en/master/user_guides/installation.html
In order to use [CaImAn](https://github.com/flatironinstitute/CaImAn) features you will need to have [CaImAn](https://github.com/flatironinstitute/CaImAn) installed into your environment. See the Mesmerize installation instructions linked above for more details: http://docs.mesmerizelab.org/en/master/user_guides/installation.html

Caiman is used for the following Viewer modules: CNMF, 3D CNMF, CNMFE, caiman motion correction and Detrend DFOF.

#### tslearn
In order to use tslearn features you will need ``tslearn~=0.2.2``. This can be installed via pip or conda, see the detailed installation instructions for more details: https://mesmerize.readthedocs.io/en/master/user_guides/installation.html
In order to use tslearn features you will need ``tslearn~=0.2.2``. This can be installed via pip or conda, see the detailed installation instructions for more details: http://docs.mesmerizelab.org/en/master/user_guides/installation.html

tslearn is used for KShape clustering, cross-correlation analysis, and some of the flowchart nodes

## Documentation
Documentation is available here: [https://mesmerize.readthedocs.io/en/master/](https://mesmerize.readthedocs.io/en/master/)
Documentation is available here: [http://docs.mesmerizelab.org/](http://docs.mesmerizelab.org/)

## Questions/Discussions

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