Merge branch 'master' of https://github.com/kushalkolar/MESmerize

CHANGELOG.md

@@ -4,6 +4,14 @@
 - Experimental use of the bioformats importer for the Viewer.
 - Export lite versions of projects for easier sharing.
 
+# 0.6.0
+### New
+- Allow installation on python >3.6
+- Logger outputs all stdout and tracebacks for exceptions to logfiles
+
+### Modified
+- `@present_exception()` windows print traceback in a scrollable box
+
 # 0.5.1
 
 ### Fixed

README.md

@@ -22,8 +22,6 @@ https://www.youtube.com/playlist?list=PLgofWiw2s4REPxH8bx8wZo_6ca435OKqg
 Additional videos on specific aspects of Mesmerize will be posted here:\
 [https://www.youtube.com/playlist?list=PLgofWiw2s4RF_RkGRUfflcj5k5KUTG3o_](https://www.youtube.com/playlist?list=PLgofWiw2s4RF_RkGRUfflcj5k5KUTG3o_)
 
-More tutorial videos will be available soon.
-
 ## Installation
 
 If you're familiar with anaconda or virtual environments, installation is as simple as:

mesmerize/viewer/core/viewer_work_environment.py

@@ -160,7 +160,13 @@ def from_pickle(cls, pickle_file_path: str, tiff_path: str = None):
         if tiff_path is not None:
             # seq = tifffile.imread(tiff_path)
             tif = tifffile.TiffFile(tiff_path, is_nih=True)
-            seq = tif.asarray(maxworkers=int(get_sys_config()['_MESMERIZE_N_THREADS']))
+            if len(tif.series) > 1:
+                seq = tif.asarray(
+                    key=range(0, len(tif.series)),
+                    maxworkers=int(get_sys_config()['_MESMERIZE_N_THREADS'])
+                )
+            else:
+                seq = tif.asarray(maxworkers=int(get_sys_config()['_MESMERIZE_N_THREADS']))
             if seq.ndim == 4:
                 # tzxy to xytz
                 seq = np.moveaxis(seq, (0, 1, 2, 3), (2, 3, 0, 1))