initial commit

kylec · Mar 27, 2015 · 57988e6 · 57988e6
1 parent 67a8dd8
commit 57988e6
Showing 1 changed file with 7 additions and 0 deletions.
diff --git a/tgt-bam-index.sh b/tgt-bam-index.sh
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+# $1 = input bam
+# $2 = target bed file
+# $2 = output bam
+
+intersectBed -abam $1 -b $2 > $3
+samtools index $3 > $3.bai