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Hack20 test region #41

Merged
merged 8 commits into from
Oct 12, 2020
Merged

Hack20 test region #41

merged 8 commits into from
Oct 12, 2020

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sletort
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@sletort sletort commented Oct 11, 2020

Tests for Region class updated.
I did not do fully getBorderingGenes because I have some difficulty to understand its purpose.

@axbazin
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axbazin commented Oct 12, 2020

Looks good to me !

getBorderingGenes is there to extract persistent genes that are bordering the region, so typically the n genes before and the n genes after the region along the contig to which the region belongs.

It is quite related to the Spot class, as we define a spot of insertion by the bordering genes of those regions - if regions have the same genomic context (i.e they have the same bordering gene families), then they are in the same area of the genomes even though they may not have a lot of genes in common.

@axbazin axbazin merged commit 91863bf into labgem:master Oct 12, 2020
@sletort sletort deleted the Hack20_test_region branch October 18, 2020 10:23
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2 participants