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✨ Add to_adata method to AnnDataAccessor #752

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merged 1 commit into from Jun 11, 2023
Merged

✨ Add to_adata method to AnnDataAccessor #752

merged 1 commit into from Jun 11, 2023

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Koncopd
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@Koncopd Koncopd commented Jun 11, 2023

This allows to load subsets of AnnData into memory as actual AnnData objects.
This allows File.backed() to supersede File.stream().

@Koncopd Koncopd merged commit b1c465e into main Jun 11, 2023
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@Koncopd Koncopd deleted the accessor_to_adata branch June 11, 2023 15:11
@falexwolf
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Thanks, @Koncopd!

Would you like me to take a crack at refactoring the streaming notebook, moving some of its content into unit tests & removing .stream() and .subsetter() from File?

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Koncopd commented Jun 11, 2023 •
edited

Maybe we should leave stream without subsetting? Just to load an anndata object into memory without caching?

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@Koncopd @falexwolf