* Adding deprecated lava.utils.system.

* Update system.py

* Update system.py

* Bugfix for missing fields in sinfo.

---------

Co-authored-by: PhilippPlank <32519998+PhilippPlank@users.noreply.github.com>

* serialization first try

* first try

* serialization implementation + unittests

* fix linting

* fix bandit

* fix unittest

* fix codacy

* added tutorial

* Update tutorial11_serialization.ipynb

* added notebook to unit tests

* Fixed broken link in tutorial.

* fix linting

* add tutorials folder to CI linting check

* Update ci.yml

* fix bug

---------

Co-authored-by: Mathis Richter <mathis.richter@intel.com>

* update refport unittest to always wait when it writes to port for consistent behavior

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

* Removed pyproject changes

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

* Fix to convolution tests. Fixed imcompatible mnist_pretrained for old python versions.

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

* Missing moudle parent fix

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

* Added ConvVarModel

* Added iterable callback function

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

* Fix codacy issues in callback_fx.py

* Fix linting in callback_fx.py

* Fix codacy sig issue in callback_fx.py

---------

Signed-off-by: bamsumit <bam_sumit@hotmail.com>
Co-authored-by: Joyesh Mishra <joyesh.mishra@intel.com>
Co-authored-by: Marcus G K Williams <168222+mgkwill@users.noreply.github.com>

* CLP initial commit: PrototypeLIF, NoveltyDetector, Readout procs/tests

* small linting fix

* Novelty detector upgraded to target next neuron; codacy errors fixed

* integration test; small fixes

* removed duplicate code in prototypeLIF process; linting fixes

* linting fixes

* Linting and codacy fixes

* remove duplicate test; some more codacy fixes

* clp tutorial01 v1

* PrototypeLIF spikes when it recieves a 3rd factor input

* a test for PrototypeLIF output spike after 3rd factor input

* clp tutorial01 ready to be roughly finished

* linting, license and utils fixes

* CLP on COIL-100, extracted features from 42 objects, tutorial01 fixes

* Allocation & prototype id tracking is abstracted away from
NoveltyDetector

* Allocator process; Readout proc sends allocation trigger if error

* introduce learning rate Var in PrototypeLIF

* updated integration tests; full system test included

* Linting fixes

* Another small lintint fix

* clp tutorial 2, 20 class experiments (Coil-100)

* PrototypeLIF hard reset capability to enable faster temporal  WTA

* allocation mechanism changed; proc interfaces changes; dense conns
added; lr var removed

* small linting fix

* small codacy fix

* prints removed, spelling mistakes fixed

* ignoring one check in an integration test

* Revert "small linting fix"

This reverts commit bde4fa9.

* CLP tutorial 1 is finalized

* Fix linting in test_models.py

* Test fix in utils.py

* Fix test of bug fix in utils.py

* Fix utils.py

* Implemented individual threadsafe random call

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

* tutorial 2 use new abstracted CLP class

* CLP tutorial 2: unsupervised and supervised experiments are seperated

* addressed reviewer's requests, added tests, removed pics etc

* Update clp.py

fix linting

* Update tutorial01_one-shot_learning_with_novelty_detection.ipynb

* Update tutorial02_clp_on_coil100.ipynb

* Update tutorial01_one-shot_learning_with_novelty_detection.ipynb

* Update tutorial02_clp_on_coil100.ipynb

* Removed sklearn dependency. Now np data gen.

* rm COIL tutorial, dataset, tests from branch

---------

Signed-off-by: bamsumit <bam_sumit@hotmail.com>
Co-authored-by: Elvin Hajizada <elvin.hajizada@intel.com>
Co-authored-by: PhilippPlank <32519998+PhilippPlank@users.noreply.github.com>
Co-authored-by: Marcus G K Williams <168222+mgkwill@users.noreply.github.com>
Co-authored-by: bamsumit <bam_sumit@hotmail.com>

* Add pypi upload, github release creation in cd.yml

* Set version to 0.8.0.dev0

* Add readme to pyproject.toml

* use v1.3 of composite action

* Test run of release creation/pypi pub in cd.yml

* Run tests from py 3.10 in cd.yml

* Fix export of output vars in cd.yml

---------

Co-authored-by: PhilippPlank <32519998+PhilippPlank@users.noreply.github.com>

Signed-off-by: Marcus G K Williams <Marcus G K Williams 168222+mgkwill@users.noreply.github.com>

* Update release job, pypi auth

Signed-off-by: Marcus G K Williams <Marcus G K Williams 168222+mgkwill@users.noreply.github.com>

* Add id-token to cd.yml

---------

Signed-off-by: Marcus G K Williams <Marcus G K Williams 168222+mgkwill@users.noreply.github.com>
Co-authored-by: Marcus G K Williams <Marcus G K Williams 168222+mgkwill@users.noreply.github.com>

Signed-off-by: Marcus G K Williams <Marcus G K Williams 168222+mgkwill@users.noreply.github.com>

Co-authored-by: Gavin Parpart <gavin.parpart@pnnl.gov>

* Adds support for Monitor a Port to observe if it is blocked

* Fix lint issues

* Redesigned Watchdog to use Multiprocessing Manager; Invoke only 2 Event Monitors and use 2 queues for watching events; Configs are piped in via compiler now

* Incorporate Codacy Suggestions

* Fix lint comments

* Fix failing unit tests to add the watchdog builder

* Code review comments

Updated version in install instructions.

Updated the installation branch to the most recent version.

Co-authored-by: PhilippPlank <32519998+PhilippPlank@users.noreply.github.com>

* update refport unittest to always wait when it writes to port for consistent behavior

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

* Removed pyproject changes

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

* Fix to convolution tests. Fixed imcompatible mnist_pretrained for old python versions.

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

* Missing moudle parent fix

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

* Added ConvVarModel

* Added iterable callback function

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

* Fix codacy issues in callback_fx.py

* Fix linting in callback_fx.py

* Fix codacy sig issue in callback_fx.py

* Bugfix to pass the args by keyword

* Delay Dense PyModel fix

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

* Fixed unittests

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

* Fixed sparse delay

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

---------

Signed-off-by: bamsumit <bam_sumit@hotmail.com>
Co-authored-by: Joyesh Mishra <joyesh.mishra@intel.com>
Co-authored-by: Marcus G K Williams <168222+mgkwill@users.noreply.github.com>

* ndarray as input weights for Sparse

* docs

* codacy

* remove implementation details from docstring and from tests

* move tests to corresponding classes

* put weight casting into extra method

* Removed unused import

---------

Co-authored-by: Mathis Richter <mathis.richter@intel.com>

Bumps [tornado](https://github.com/tornadoweb/tornado) from 6.3.2 to 6.3.3.
- [Changelog](https://github.com/tornadoweb/tornado/blob/master/docs/releases.rst)
- [Commits](tornadoweb/tornado@v6.3.2...v6.3.3)

---
updated-dependencies:
- dependency-name: tornado
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

Bumps [cryptography](https://github.com/pyca/cryptography) from 41.0.2 to 41.0.3.
- [Changelog](https://github.com/pyca/cryptography/blob/main/CHANGELOG.rst)
- [Commits](pyca/cryptography@41.0.2...41.0.3)

---
updated-dependencies:
- dependency-name: cryptography
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Mathis Richter <mathis.richter@intel.com>

Updated the installation branch to the most recent version.

Co-authored-by: PhilippPlank <32519998+PhilippPlank@users.noreply.github.com>

Bumps [gitpython](https://github.com/gitpython-developers/GitPython) from 3.1.32 to 3.1.35.
- [Release notes](https://github.com/gitpython-developers/GitPython/releases)
- [Changelog](https://github.com/gitpython-developers/GitPython/blob/main/CHANGES)
- [Commits](gitpython-developers/GitPython@3.1.32...3.1.35)

---
updated-dependencies:
- dependency-name: gitpython
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Made changes to channel builder for SpikeIO

* Added ChannelStub to configure channels

* Added NcSpikeIOVarModel

* Refined the NcSpikeIOVarModel

* Add interface_type and populate it in SpikeIOVarModel

* Add Interface Type

* Test PyNcChannel for Dense and Sparse Data using Unix Message Queues

* Faster encoding for sparse csp_port.send

* Added msg_queue_id to NcSpikeIOVarModel

* Added defaults for ByteEncoder

* Add advance_io API to PyOutPort

* Rename and refactor ConnectionConfig

* Only create channels for ChannelBuilderPyNc; Ignore ChannelBuilderNx

* Added spike_io_port to connection config and var model

* Integrate lower C level code, fix Lava bugs

* Fix merge

* Add enum for spike io mode and add it to ConnectionConfig and SpikeIO Var Model

* Fix indices dtype in sparse send to int32

* Add advance_time API to PyLoihiProcessModel

* Initial commit for spikeio output mode

* Rename to advance_to_time_step API

* Switch to TIME_COMPARE mode as default

* Commit for Spike Block Output Mode

* Move the axon allocation to 2 instead of 1 for output side

* Create a new config for watchdog and print warning; Set PyProcCompiler SpikeCounter Offset to None when object gets deleted

* Expose Mac Address, Num Input Buckets and Use Ethernet Interface from ConnectionConfig

* Fix lint specific errors

* fix codacy errors

* Fix an issue with length of connection_config list

* Fix unit tests

---------

Co-authored-by: yashward <yashwardhan.singh@intel.com>
Co-authored-by: Julia <julia.a.gould@intel.com>

* CLP initial commit: PrototypeLIF, NoveltyDetector, Readout procs/tests

* small linting fix

* Novelty detector upgraded to target next neuron; codacy errors fixed

* integration test; small fixes

* removed duplicate code in prototypeLIF process; linting fixes

* linting fixes

* Linting and codacy fixes

* remove duplicate test; some more codacy fixes

* PrototypeLIF spikes when it recieves a 3rd factor input

* a test for PrototypeLIF output spike after 3rd factor input

* Allocation & prototype id tracking is abstracted away from
NoveltyDetector

* Allocator process; Readout proc sends allocation trigger if error

* introduce learning rate Var in PrototypeLIF

* updated integration tests; full system test included

* Linting fixes

* Another small lintint fix

* PrototypeLIF hard reset capability to enable faster temporal  WTA

* allocation mechanism changed; proc interfaces changes; dense conns
added; lr var removed

* small linting fix

* small codacy fix

* prints removed, spelling mistakes fixed

* ignoring one check in an integration test

* Revert "small linting fix"

This reverts commit bde4fa9.

* Fix linting in test_models.py

* Test fix in utils.py

* Fix test of bug fix in utils.py

* Fix utils.py

* Implemented individual threadsafe random call

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

* fix figures, removed redundant cell

---------

Signed-off-by: bamsumit <bam_sumit@hotmail.com>
Co-authored-by: PhilippPlank <32519998+PhilippPlank@users.noreply.github.com>
Co-authored-by: Marcus G K Williams <168222+mgkwill@users.noreply.github.com>
Co-authored-by: bamsumit <bam_sumit@hotmail.com>

* CLP initial commit: PrototypeLIF, NoveltyDetector, Readout procs/tests

* small linting fix

* Novelty detector upgraded to target next neuron; codacy errors fixed

* integration test; small fixes

* removed duplicate code in prototypeLIF process; linting fixes

* linting fixes

* Linting and codacy fixes

* remove duplicate test; some more codacy fixes

* clp tutorial01 v1

* PrototypeLIF spikes when it recieves a 3rd factor input

* a test for PrototypeLIF output spike after 3rd factor input

* clp tutorial01 ready to be roughly finished

* linting, license and utils fixes

* CLP on COIL-100, extracted features from 42 objects, tutorial01 fixes

* Allocation & prototype id tracking is abstracted away from
NoveltyDetector

* Allocator process; Readout proc sends allocation trigger if error

* introduce learning rate Var in PrototypeLIF

* updated integration tests; full system test included

* Linting fixes

* Another small lintint fix

* clp tutorial 2, 20 class experiments (Coil-100)

* PrototypeLIF hard reset capability to enable faster temporal  WTA

* allocation mechanism changed; proc interfaces changes; dense conns
added; lr var removed

* small linting fix

* small codacy fix

* prints removed, spelling mistakes fixed

* ignoring one check in an integration test

* Revert "small linting fix"

This reverts commit bde4fa9.

* CLP tutorial 1 is finalized

* Fix linting in test_models.py

* Test fix in utils.py

* Fix test of bug fix in utils.py

* Fix utils.py

* Implemented individual threadsafe random call

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

* tutorial 2 use new abstracted CLP class

* CLP tutorial 2: unsupervised and supervised experiments are seperated

* addressed reviewer's requests, added tests, removed pics etc

* Update clp.py

fix linting

* Update tutorial01_one-shot_learning_with_novelty_detection.ipynb

* Update tutorial02_clp_on_coil100.ipynb

* Update tutorial01_one-shot_learning_with_novelty_detection.ipynb

* Update tutorial02_clp_on_coil100.ipynb

* CLP class and experiments improved; pytorch dependency removed;
feature extraction added

* Allocator accepts arbitrary initial index as param

* New experiments; improved CLP class; continuous experimentation; new
features for COIL-100; toch as optional dependency

* linting fixes

* Temporarily skipping CLP tutorials test till sk-learn is added

* scikit-learn added to poetry; tutorial tst is re-enabled

---------

Signed-off-by: bamsumit <bam_sumit@hotmail.com>
Co-authored-by: PhilippPlank <32519998+PhilippPlank@users.noreply.github.com>
Co-authored-by: Marcus G K Williams <168222+mgkwill@users.noreply.github.com>
Co-authored-by: bamsumit <bam_sumit@hotmail.com>

Bumps [cryptography](https://github.com/pyca/cryptography) from 41.0.3 to 41.0.4.
- [Changelog](https://github.com/pyca/cryptography/blob/main/CHANGELOG.rst)
- [Commits](pyca/cryptography@41.0.3...41.0.4)

---
updated-dependencies:
- dependency-name: cryptography
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

…ts (#792)

* update refport unittest to always wait when it writes to port for consistent behavior

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

* Removed pyproject changes

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

* Fix to convolution tests. Fixed imcompatible mnist_pretrained for old python versions.

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

* Missing moudle parent fix

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

* Added ConvVarModel

* Added iterable callback function

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

* Fix codacy issues in callback_fx.py

* Fix linting in callback_fx.py

* Fix codacy sig issue in callback_fx.py

* Bugfix to pass the args by keyword

* Delay Dense PyModel fix

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

* Fixed unittests

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

* Fixed sparse delay

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

* IO modules fixes

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

* IO modules fixes

Signed-off-by: bamsumit <bam_sumit@hotmail.com>

---------

Signed-off-by: bamsumit <bam_sumit@hotmail.com>
Co-authored-by: Joyesh Mishra <joyesh.mishra@intel.com>
Co-authored-by: Marcus G K Williams <168222+mgkwill@users.noreply.github.com>

* resfire process and fixed process model

* changed vth->uth in RFZero. Added tests.

* removed unused imports

* unused imports, copyright statement.

* bsd license on resfire models.py

Bumps [pillow](https://github.com/python-pillow/Pillow) from 10.0.0 to 10.0.1.
- [Release notes](https://github.com/python-pillow/Pillow/releases)
- [Changelog](https://github.com/python-pillow/Pillow/blob/main/CHANGES.rst)
- [Commits](python-pillow/Pillow@10.0.0...10.0.1)

---
updated-dependencies:
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  dependency-type: indirect
...

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: PhilippPlank <32519998+PhilippPlank@users.noreply.github.com>

Bumps [urllib3](https://github.com/urllib3/urllib3) from 1.26.16 to 1.26.17.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](urllib3/urllib3@1.26.16...1.26.17)

---
updated-dependencies:
- dependency-name: urllib3
  dependency-type: indirect
...

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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…e network

…ectors

…syntax.

… overloading

…onnecting AlgebraicVectors and syntax.