Do not need dispersal to have seeding #252
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name: CODECOV-check | |
on: | |
push: | |
branches: [ master ] | |
pull_request: | |
branches: [ master ] | |
# Increment this version when we want to clear cache | |
env: | |
cache-version: v1 | |
r-version: 4.1 | |
jobs: | |
CODECOV-check: | |
runs-on: ubuntu-20.04 | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- uses: actions/checkout@v2 | |
with: | |
r-version: ${{ env.r-version }} | |
- uses: r-lib/actions/setup-r@v2 | |
- uses: r-lib/actions/setup-pandoc@v2 | |
- name: Query dependencies | |
run: | | |
install.packages('remotes') | |
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
shell: Rscript {0} | |
- name: Cache R packages | |
uses: actions/cache@v2 | |
with: | |
path: ${{ env.R_LIBS_USER }} | |
key: ${{ env.cache-version }}-${{ runner.os }}-${{ env.r-version }}-${{ hashFiles('.github/depends.Rds') }} | |
restore-keys: ${{ env.cache-version }}-${{ runner.os }}-${{ env.r-version }}- | |
- name: Install system dependencies on Linux | |
run: | | |
sudo apt install libgdal-dev libproj-dev libgeos-dev libudunits2-dev libgfortran5 | |
while read -r cmd | |
do | |
eval sudo $cmd | |
done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "18.04"))') | |
- name: Install dependencies | |
run: | | |
remotes::install_deps(dependencies = TRUE) | |
remotes::install_version("BH", version='1.75.0-0') | |
remotes::install_cran("covr") | |
shell: Rscript {0} | |
- name: Test coverage | |
run: | | |
R CMD INSTALL . | |
Rscript -e 'covr::codecov()' | |