#MultiExperiment Viewer
===
The new web client MeV
===
To build you need to have Java 7, maven 3.0+, R 3.0+, node 4.5.0 and npm 2.15+ The following instructions pertain to Ubuntu 16.04, OSX install procedure will slightly differ
##Development ###Get Source Fork the repository then download source
mkdir -p ~/git/mev
cd ~/git/mev
git clone https://github.com/yourusername/mev.git
git remote add upstream https://github.com/dfci-cccb/mev.git
###Install Dependencies ####ProtoBuff
sudo apt-get install build-essential libtool
sudo apt-get install autoconf
cd ~/git
git clone https://github.com/dfci-cccb/protobuf.git
cd protobuf
./autogen.sh
./configure --prefix=/usr
make
make check
sudo make install
#####Install R Dependencies
sudo apt-get install gfortran
sudo apt-get install libreadline-dev
Install R from http://lib.stat.cmu.edu/R/CRAN/
######Install R Packages Install from R console #######Multtest
> source("https://bioconductor.org/biocLite.R")
biocLite("multtest")
#######DESeq
Dependenciessudo apt install libxml2-dev
source("http://bioconductor.org/biocLite.R");
biocLite("DESeq");
######RProtoBuff
Dependencies:
sudo apt install libcurl4-gnutls-dev
###Build Web App
cd ~/git/mev
mvn clean install
###Web Client Assumes node 4.5.0 and npm version 2.15+ is installed is intalled ####Install Node Packages Dependency: (Required: Required by Vegajs for mevNetworkGraph)
sudo apt-get install libcairo2-dev libjpeg-dev libgif-dev
npm install -g linklocal
npm install -g bower
npm install -g gulp grunt
####Build Web Client
cd ~/git/mev/web/src/main/javascript/edu/dfci/cccb/mev/web/ui
linklocal -r
bower install
npm run dev
gulp
###Run After installing the dependencies and building web app and web client you're ready to run. First launch RServe, then the WebApp ####Start RServe
cd ~/git/mev/web
mvn rserve:run
Note: when running for the first time the above command will install required R packages
####Start Web Server
cd ~/git/mev/web
mvn jetty:run
You may now point your browser to http://localhost:8080