Genomic insights into adaptations of TMA-utilizing methanogens to diverse habitats including the human gut

Code associated with the Methanomassiliicoccales ecology and adaptations paper

Citation

Genomic Insights into Adaptations of Trimethylamine-Utilizing Methanogens to Diverse Habitats, Including the Human Gut.
Jacobo de la Cuesta-Zuluaga, Tim D. Spector, Nicholas D. Youngblut, Ruth E. Ley
mSystems Feb 2021, 6 (1) e00939-20; DOI: 10.1128/mSystems.00939-20

Dependencies

• Linux/Unix
• Jupyter
• Conda & nb-conda (for use of conda with Jupyter notebooks)
• See Jupyter notebooks for R packages used for each analysis
• For versions, see the sessionInfo() information at the end of each notebook