Fields in bubble output

[egoltsman]

Hello,
I'm testing a few SV detection methods on a small rGFA graph I produced with 5 individuals using minigraph. It seems like the 'bubble' tool would be useful for detecting small to medium sized (<100kb) structural variants... at least simple ones. I was able to discern from the code the different fields in the output, except for b->cf_min, b->cf_max, b->cf_ref. In my test case these fields are always -1. If these are meaningful fields, could you please explain what they mean?

Thank you

[lh3]

Sorry for the very late response. You can ignore those three fields. They were intended to show frequencies calculated by minigraph --cov. However, this --cov option will be deprecated and thus those three fields won't be useful any more.