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clarify multi-part index in option -I (#301)
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lh3 committed Jun 13, 2022
1 parent 50a26a6 commit 767556b
Showing 1 changed file with 3 additions and 2 deletions.
5 changes: 3 additions & 2 deletions minimap2.1
Original file line number Diff line number Diff line change
Expand Up @@ -94,10 +94,11 @@ bases in
.IR target.fa ,
minimap2 needs to read
.I query.fa
multiple times to map it against each batch of target sequences.
multiple times to map it against each batch of target sequences. This would create a multi-part index.
.I NUM
may be ending with k/K/m/M/g/G. NB: mapping quality is incorrect given a
multi-part index.
multi-part index. See also option
.BR --split-prefix .
.TP
.B --idx-no-seq
Don't store target sequences in the index. It saves disk space and memory but
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