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Scrimer: designing primers from transcriptome data

Scrimer is a GNU/Linux pipeline for designing PCR and genotyping primers from transcriptomic data.

Documentation

The documentation is available online: http://scrimer.rtfd.org

Source files in sphinx format are in the doc directory.

Source code and bug reports

https://github.com/libor-m/scrimer

License

Scrimer is licensed under GNU Affero General Public License.

If you use any part of the pipeline, please cite the appropriate publication (in preparation now).

Contact

Libor Morkovsky
Department of Zoology, Charles University in Prague
morkovsk@natur.cuni.cz

About

A pipeline producing primers for sites distinguishing two close species using transcriptome reads and a reference genome.

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