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Issues list

REGENIE: cannot read file `*.loco* on CloudOS
#132 opened Jan 17, 2022 by evagradovich
BOLT-LMM: Link output to visualizations + report
#129 opened Jan 6, 2022 by evagradovich
BOLT-LMM: add docs
#128 opened Jan 6, 2022 by evagradovich
Memory allocation errors in plink when running with larger datasets
#126 opened Nov 23, 2021 by evagradovich
For different memory labels, change proportion of RAM assigned to plink
#125 opened Nov 22, 2021 by evagradovich
Bgen test config CI tests failing with latest NXF version (21.10.0)
#124 opened Nov 19, 2021 by evagradovich
1
Add option to accept genome-wide files as input and split by chromosome
#121 opened Nov 16, 2021 by evagradovich
Support use of only PCs as covariates
#119 opened Nov 2, 2021 by evagradovich
@evagradovich
Adds docs and extra set of LD pruning steps
#116 opened Nov 1, 2021 by cgpu
Replace the s3 bucket with s3://lifebit-featured-datasets
#115 opened Nov 1, 2021 by cgpu
make test configs runnable on CloudOS
#109 opened Aug 26, 2021 by evagradovich
Implement individual-level missingness filter
#106 opened Aug 17, 2021 by evagradovich
Docker image needs to be rebuilt
#101 opened Jan 25, 2021 by mcamarad
Update SAIGE version to latest
#94 opened Nov 27, 2020 by kousathanas
@cgpu
Encoding chromosomes as 'chr1' or '1'
#91 opened Nov 27, 2020 by kousathanas
1
Adds blacklist for continuous variables that users don't want to transform
#75 opened Oct 29, 2020 by mcamarad
all_contrasts & case_vs_group_contrasts CI test fail due to memory issues
#71 opened Oct 29, 2020 by mcamarad
ToDo: Investigate if the stats for this population can be custom P1 Important for pipeline completeness and good ux or refactors a code smell
#66 opened Oct 21, 2020 by cgpu
1
Explore how to extract relevant results from LDSC output to integrate it in the report. enhancement New feature or request P2 Nice to have feature, adds functionality
#61 opened Oct 20, 2020 by mcamarad
Replace awk command
#56 opened Oct 15, 2020 by cgpu
Implement chrX, swap X with 23 for create_report process
#55 opened Oct 15, 2020 by cgpu
Split gwas_filtering, step_2 SAIGE by autosomes, sex chromosomes (will only use X not Y) high-priority
#54 opened Oct 15, 2020 by cgpu
Replace awk with gawk bug Something isn't working
#53 opened Oct 15, 2020 by cgpu
@cgpu
Restore old behaviour to not use CB as input enhancement New feature or request P2 Nice to have feature, adds functionality
#52 opened Oct 15, 2020 by mcamarad
Implement multiple contrast reporting and handling of results
#49 opened Oct 9, 2020 by mcamarad
ProTip! Updated in the last three days: updated:>2024-09-13.