Fix invalid GATK container (nf-core#3673)

Fix GATK container which was invalid Fixes nf-core#3668
limrp · Jul 28, 2023 · 674c31a · 674c31a
1 parent 879be43
commit 674c31a
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/modules/nf-core/gatk4/determinegermlinecontigploidy/main.nf b/modules/nf-core/gatk4/determinegermlinecontigploidy/main.nf
@@ -4,7 +4,7 @@ process GATK4_DETERMINEGERMLINECONTIGPLOIDY {
     label 'process_single'
 
     //Conda is not supported at the moment: https://github.com/broadinstitute/gatk/issues/7811
-    container "quay.io/nf-core/gatk:4.4.0.0" //Biocontainers is missing a package
+    container "nf-core/gatk:4.4.0.0" //Biocontainers is missing a package
 
     // Exit if running this module with -profile conda / -profile mamba
     if (workflow.profile.tokenize(',').intersect(['conda', 'mamba']).size() >= 1) {

diff --git a/modules/nf-core/gatk4/germlinecnvcaller/main.nf b/modules/nf-core/gatk4/germlinecnvcaller/main.nf
@@ -3,7 +3,7 @@ process GATK4_GERMLINECNVCALLER {
     label 'process_single'
 
     //Conda is not supported at the moment: https://github.com/broadinstitute/gatk/issues/7811
-    container "quay.io/nf-core/gatk:4.4.0.0" //Biocontainers is missing a package
+    container "nf-core/gatk:4.4.0.0" //Biocontainers is missing a package
 
     // Exit if running this module with -profile conda / -profile mamba
     if (workflow.profile.tokenize(',').intersect(['conda', 'mamba']).size() >= 1) {

diff --git a/modules/nf-core/gatk4/postprocessgermlinecnvcalls/main.nf b/modules/nf-core/gatk4/postprocessgermlinecnvcalls/main.nf
@@ -3,7 +3,7 @@ process GATK4_POSTPROCESSGERMLINECNVCALLS {
     label 'process_single'
 
     //Conda is not supported at the moment: https://github.com/broadinstitute/gatk/issues/7811
-    container "quay.io/nf-core/gatk:4.4.0.0" //Biocontainers is missing a package
+    container "nf-core/gatk:4.4.0.0" //Biocontainers is missing a package
 
     // Exit if running this module with -profile conda / -profile mamba
     if (workflow.profile.tokenize(',').intersect(['conda', 'mamba']).size() >= 1) {