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1. Hyb-Seq_protocol Hyb-Seq_protocol Public

   A protocol for designing probes for targeted sequence capture from the input of genomic and transcriptomic data, and methods for analyzing the resulting sequence data.

   Python 4 5

2. polymorphic_read_counter_bwaPileup polymorphic_read_counter_bwaPileup Public

   Forked from kweitemier/polymorphic_read_counter_bwaPileup

   Calculates the proportion of reads at a DNA sequence position that differ from the majority.

   Perl

3. fastq_collapse fastq_collapse Public

   Forked from kweitemier/fastq_collapse

   Discards exact fastq sequence duplicates, preserving the highest average quality score. It also makes a file containing all the duplicated reads.

   Python

4. POLiMAPS POLiMAPS Public

   Forked from jacobtennessen/POLiMAPS

   Perl scripts for analyzing polyploid DNA sequence data

   Perl 1

5. utility-scripts utility-scripts Public

   Utility scripts written for the Cronn and Liston labs

   Python 1

6. Workshops Workshops Public