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Streaming/Windowed GeoTiff Reading #1905

Merged
merged 90 commits into from
Mar 10, 2017
Merged

Streaming/Windowed GeoTiff Reading #1905

merged 90 commits into from
Mar 10, 2017

Commits on Dec 5, 2016

  1. Added StreamingSegmentBytes 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 5, 2016
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  2. Integrated StreamingSegmentBytes in SinglebandGeoTiffs 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 5, 2016
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  3. Integrated StreamingSegmentBytes in MultibandGeoTiffs 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 5, 2016
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  4. Integrated StreamingSegmentBytes in GeoTiffReader 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 5, 2016
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  5. Integrated StreamingSegmentBytes into Int16GeoTiffTile 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 5, 2016
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  6. Integrated StreamingSegmentBytes into UByteGeoTiffTile 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 5, 2016
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  7. Integrated StreamingSegmentBytes into Int16GeoTiffTile 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 5, 2016
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  8. Added StreamingSegmentBytesSpec 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 5, 2016
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Commits on Dec 6, 2016

  1. Integrated StreamingSegmentBytes into ByteGeoTiffTile 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 6, 2016
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  2. Integrated StreamingSegmentBytes into UInt16GeoTiffTile 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 6, 2016
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  3. Integrated StreamingSegmentBytes into UInt32GeoTiffTile 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 6, 2016
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  4. Integrated StreamingSegmentBytes into Float32GeoTiffTile 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 6, 2016
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  5. Integrated StreamingSegmentBytes into Float64GeoTiffTile 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 6, 2016
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  6. Added intersectingSegments to ArraySegmentBytes 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 6, 2016
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  7. Removed LazySegmentBytes 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 6, 2016
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  8. Added intersectingSegments to SegmentBytes 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 6, 2016
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  9. Continuing debugging work 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 6, 2016
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  10. Continued to debug StreamingSegmentBytes 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 6, 2016
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  11. Removed LazySegmentBytes from SegmentBytesSpec 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 6, 2016
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  12. Removed some debugging code and extranious methods from StreamingSegm… 

    …entBytes

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    jbouffard committed Dec 6, 2016
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  13. Updated StreamingSegmentBytesSpec to reflect the changes to Streaming… 

    …SegmentBytes

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    jbouffard committed Dec 6, 2016
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  14. Moved MergeQueue from the Spark to Util 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 6, 2016
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  15. Updated the import path for MergeQueue in all files that use it 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
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  16. Began work on reading consecutive segments as one chunk 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 6, 2016
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  17. Removed bug that created duplicate chunks 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 6, 2016
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  18. Switched paramters around in ByteReaderExtensions 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 6, 2016
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  19. Updated TiffTagsReader to reflect the changes in ByteReaderExtensions 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 6, 2016
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  20. Continued to bug fix 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 6, 2016
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Commits on Dec 8, 2016

  1. Fix streaming segment chunking

    @echeipesh
    echeipesh committed Dec 8, 2016
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  2. Updated the various GeoTiffTiles crop methods to reflect the changes … 

    …made in StreamingSegmentBytes

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    jbouffard committed Dec 8, 2016
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  3. All tests now run in the WindowedReadingSpec 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 8, 2016
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  4. Added readStrippedSegmentBytes and readTileSegmentBytes methods to Ge… 

    …oTiffTile

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    jbouffard committed Dec 8, 2016
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  5. Changed how bytes are read in for the ByteGeoTiffTile 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 8, 2016
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  6. Changed how bytes are read in for the UByteGeoTiffTile 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 8, 2016
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  7. Changed how bytes are read in for the Int16GeoTiffTile 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
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  8. Changed how bytes are read in for the Int32GeoTiffTile 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 8, 2016
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  9. Changed how bytes are read in for the UInt32GeoTiffTile 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 8, 2016
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  10. Changed how bytes are read in for the Float32GeoTiffTile 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 8, 2016
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  11. Changed how bytes are read in for the Float64GeoTiffTile 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 8, 2016
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Commits on Dec 9, 2016

  1. Add .crop to GeoTiffSegmentLayout

    @echeipesh
    echeipesh committed Dec 9, 2016
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  2. Update comments in GeoTiffSegmentLayout

    @echeipesh
    echeipesh committed Dec 9, 2016
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  3. Add GeoTiffSegmentLayout.intersectingSegments

    @echeipesh
    echeipesh committed Dec 9, 2016
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  4. Reimplement GeoTiffTile.crop using segment byte assign instead of byt… 

    …e range copies
    @echeipesh
    echeipesh committed Dec 9, 2016
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  5. Put GridIndexTransform into its own file 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 9, 2016
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  6. Created StripedSegmentTransform that extends GridIndexTransform 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 9, 2016
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  7. Created TiledSegmentTransform that extends GridIndexTransform 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 9, 2016
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  8. Removed GridIndexTransform from GeoTiffSegmentLayout 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
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  9. Reimplamented how segmentTransform is called in GeoTiffTile 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 9, 2016
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  10. Continued reimplamentation of segmentTransform calls in GeoTiffTile 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 9, 2016
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  11. Reimplamented how segmentTransform is called in GeoTiffMultibandTile 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 9, 2016
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  12. Reimplamented how segmentTransform is called in BitGeoTiffTile 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 9, 2016
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  13. Reimplamented how segmentTransform is called in Int16GeoTiffTile 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 9, 2016
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  14. Reimplamented how segmentTransform is called in UInt16GeoTiffTile 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 9, 2016
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  15. Reimplamented how segmentTransform is called in UInt32GeoTiffTile 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 9, 2016
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  16. Re-added the getSegmentTransform method to GeoTiffSegmentLayout 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 9, 2016
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  17. Changed how segmentTransform is obtained 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 9, 2016
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  18. Removed the crop method from BitGeoTiffTile 

    Signed-off-by: jbouffard <jbouffard@azavea.com>
    jbouffard committed Dec 9, 2016
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Commits on Dec 12, 2016

  1. reorganize GeoTiffTile around reading segments in chunks

    @echeipesh
    echeipesh committed Dec 12, 2016
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  2. Fix NoData checking in Float32 and Float64 GeoTiff tile

    @echeipesh
    echeipesh committed Dec 12, 2016
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  3. Use getSegments in MultibandGeoTiff

    @echeipesh
    echeipesh committed Dec 12, 2016
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  4. Remove Intersection, no longer used

    @echeipesh
    echeipesh committed Dec 12, 2016
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  5. Move Striped and Tiled IndexTransform to trait file

    @echeipesh
    echeipesh committed Dec 12, 2016
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  6. StreamingSegmentBytes don't need to know the layout

    @echeipesh
    echeipesh committed Dec 12, 2016
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  7. Fix reading readSignedFractionalsTag

    @echeipesh
    echeipesh committed Dec 12, 2016
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  8. Fix double decompression

    @echeipesh
    echeipesh committed Dec 12, 2016
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  9. Add logger to StreamingSegmentBytes

    @echeipesh
    echeipesh committed Dec 12, 2016
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  10. Use chunking read in ArraySegmentBytes apply

    @echeipesh
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Commits on Dec 16, 2016

  1. Add GeoTiffSegment.deinterleave

    @echeipesh
    echeipesh committed Dec 16, 2016
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Commits on Dec 17, 2016

  1. Add GeoTiffSegment.deinterleaveBits

    @echeipesh
    echeipesh committed Dec 17, 2016
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  2. Factor out pixel interleave decoding

    @echeipesh
    echeipesh committed Dec 17, 2016
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Commits on Feb 25, 2017

  1. Fix reading multiband bit interleave

    @echeipesh
    echeipesh committed Feb 25, 2017
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  2. restore original name of LazySegmentBytes

    @echeipesh
    echeipesh committed Feb 25, 2017
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Commits on Feb 27, 2017

  1. Fix: MultibandTile crop methods need special treatment for geotiff tiles

    @echeipesh
    echeipesh committed Feb 27, 2017
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  2. Fetch only intersecting segments during MultibandGeoTiff crop

    @echeipesh
    echeipesh committed Feb 27, 2017
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Commits on Feb 28, 2017

  1. Use java.lang.Float.isNaN(nd) test for performance

    @echeipesh
    echeipesh committed Feb 28, 2017
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  2. more getSegments usage 

    Signed-off-by: Grigory Pomadchin <gr.pomadchin@gmail.com>
    @pomadchin
    pomadchin committed Feb 28, 2017
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  3. poking around mbgeotiff crop method 

    Signed-off-by: Grigory Pomadchin <gr.pomadchin@gmail.com>
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    pomadchin committed Feb 28, 2017
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Commits on Mar 1, 2017

  1. fix crop function 

    Signed-off-by: Grigory Pomadchin <gr.pomadchin@gmail.com>
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    pomadchin committed Mar 1, 2017
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Commits on Mar 2, 2017

  1. Merge branch 'master' of github.com:pomadchin/geotrellis into chunky-… 

    …streaming

Signed-off-by: Grigory Pomadchin <gr.pomadchin@gmail.com>
    @pomadchin
    pomadchin committed Mar 2, 2017
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  2. fix s3 unit tests 

    Signed-off-by: Grigory Pomadchin <gr.pomadchin@gmail.com>
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    pomadchin committed Mar 2, 2017
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  3. deinterleave functions fix 

    Signed-off-by: Grigory Pomadchin <gr.pomadchin@gmail.com>
    @pomadchin
    pomadchin committed Mar 2, 2017
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  4. improve bands and subset functions 

    Signed-off-by: Grigory Pomadchin <gr.pomadchin@gmail.com>
    @pomadchin
    pomadchin committed Mar 2, 2017
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  5. _combine(initValueHolder: ...) function refactor 

    Signed-off-by: Grigory Pomadchin <gr.pomadchin@gmail.com>
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    pomadchin committed Mar 2, 2017
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  6. combiners arity 2 refactor 

    Signed-off-by: Grigory Pomadchin <gr.pomadchin@gmail.com>
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  7. use getSegments in GeoTiffWriter 

    Signed-off-by: Grigory Pomadchin <gr.pomadchin@gmail.com>
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    pomadchin committed Mar 2, 2017
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  8. multiband combiners improvements, moved boilerplate to use getSegment… 

    …s function

Signed-off-by: Grigory Pomadchin <gr.pomadchin@gmail.com>
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  9. fix multiband combiners 

    Signed-off-by: Grigory Pomadchin <gr.pomadchin@gmail.com>
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    pomadchin committed Mar 2, 2017
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Commits on Mar 3, 2017

  1. restore LazySegmentBytes tests 

    Signed-off-by: Grigory Pomadchin <gr.pomadchin@gmail.com>
    @pomadchin
    pomadchin committed Mar 3, 2017
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Commits on Mar 9, 2017

  1. minimize API impact of the changes

    @echeipesh
    echeipesh committed Mar 9, 2017
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  2. Remove GeoTiffSegmenTransform.crop method until it is fully used

    @echeipesh
    echeipesh committed Mar 9, 2017
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