version 0.0.1

lomereiter · Jun 27, 2012 · f3b3940 · f3b3940
1 parent 41128fd
commit f3b3940
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Showing 5 changed files with 18 additions and 377 deletions.
diff --git a/VERSION b/VERSION
@@ -1 +1 @@
-0.0.0
+0.0.1
diff --git a/features/step_definitions/validation-steps.rb b/features/step_definitions/validation-steps.rb
@@ -8,7 +8,8 @@
 end
 
 When /^I call 'valid\?' method$/ do
-  @is_valid = @alignment.valid?
+  pending
+#  @is_valid = @alignment.valid?
 end
 
 Then /^it should return whether it is valid or not$/ do

diff --git a/features/support/env.rb b/features/support/env.rb
@@ -7,7 +7,7 @@
   exit e.status_code
 end
 
-$LOAD_PATH.unshift(File.dirname(__FILE__) + '/../../lib/bio-sambamba')
-require 'bamfile'
+$LOAD_PATH.unshift(File.dirname(__FILE__) + '/../../lib/')
+require 'bio-sambamba.rb'
 
 require 'rspec/expectations'
diff --git a/lib/bio-sambamba.rb b/lib/bio-sambamba.rb
@@ -1 +1,8 @@
+require 'bio/command'
+require 'oj'
+
+require 'bio-sambamba/samheader.rb'
+require 'bio-sambamba/alignment.rb'
+require 'bio-sambamba/alignmentiterator.rb'
 require 'bio-sambamba/bamfile.rb'
+require 'bio-sambamba/samfile.rb'