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fba

Small experiment to calculate flux balance analysis in the browser.

  • visualize systems biology models by dropping a sbml file in the browser
  • move the parser to the client side code, too
  • do sbml parsing in a webworker
  • switch to cytoscape for visualization
  • enable undo
  • enable persistent undo
  • show recent models
  • allow the user to define constraints
  • run fba
  • present the results
  • put the analysis code in a webworker

To start it, clone the project then do npm install followed by npm start. Then visit localhost:9966 in your browser. Drag and drop an sbml file anywhere in the window and you should see the model unfold.

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