Lance's dotfiles and other config

Setup dotfiles

1. git clone https://github.com/lparsons/dotfiles.git ~/dotfiles

2. cd ~/dotfiles

3. ./install.sh

Setup Tmux Plugin Manager and install plugins

1. git clone https://github.com/tmux-plugins/tpm ~/.tmux/plugins/tpm

2. Start tmux then Prefix - I (capital I)

Install Miniforge

1. Install miniforge

   curl -L -O "https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-$(uname)-$(uname -m).sh"
   bash Miniforge3-$(uname)-$(uname -m).sh

2. Configure bioconda channels

   conda config --add channels nodefaults
   conda config --add channels bioconda
   conda config --add channels conda-forge
   conda config --set channel_priority strict

Install NeoVim and plugins

1. Install neovim

   mkdir -p ~/.local/nvim/VERSION
   cd ~/.local/nvim/VERSION
   
   curl -LO https://github.com/neovim/neovim/releases/latest/download/nvim.appimage
   chmod u+x nvim.appimage
   ./nvim.appimage
   
   cd ~/.local/nvim
   ln -s VERSION default
   
   cd ~/.local
   mkdir bin
   cd bin
   ln -s ~/.local/nvim/default/nvim.appimage nvim

2. Install vim-plug and plugins

   sh -c 'curl -fLo "${XDG_DATA_HOME:-$HOME/.local/share}"/nvim/site/autoload/plug.vim --create-dirs \
          https://raw.githubusercontent.com/junegunn/vim-plug/master/plug.vim'

   Reload the file or restart Vim, then you can,

   :PlugInstall to install the plugins :PlugUpdate to install or update the plugins :PlugDiff to review the changes from the last update

3. Create python3 environment (set correct path in .vimrc)

   mamba create -n neovim3 pynvim

Update .bashrc

# Set nvim as default editor (replace vi/vim)
 if type "nvim" &> /dev/null; then    
     alias vi="nvim"    
     alias vim="nvim"    
     alias vimdiff='nvim -d'    
     export EDITOR=nvim    
 fi 
 
 # Setup promptline
 source "${HOME}/.shell_prompt.sh"
 ```