Skip to content
@lrslab

Long Read Sequencing (lrs) lab

The lab page for long read sequencing lab @ City University of Hong Kong

Popular repositories Loading

  1. nanoCEM nanoCEM Public

    "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.

    Python 11 1

  2. Hammerhead Hammerhead Public

    This project is designed to find the potential modifications in bacterial genomes.

    Python 7 1

  3. Benchmarking_for_ONT_reads Benchmarking_for_ONT_reads Public

    The codes used to benchmark ONT reads.

    R 4 1

  4. Giraffe_View Giraffe_View Public

    Forked from lxd98/Giraffe_View

    Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.

    Python 4

  5. Zebrafish-Multisequencing Zebrafish-Multisequencing Public

    Forked from lxd98/zebrafish_scripts

    The scripts used in analyzing the zebrafish datasets.

    Python 2

  6. DRS_vRNA_modification_content DRS_vRNA_modification_content Public

    Scripts used in our paper (Utilization of Nanopore Direct RNA Sequencing to analyze intracellular viral RNA modifications of the Sindbis virus)

    Python 2

Repositories

Showing 10 of 15 repositories
  • anasfv Public

    The analysis pipeline for ASFV genome assembly and phylogenetic analysis.

    lrslab/anasfv’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Jul 26, 2024
  • DRS_vRNA_modification_content Public

    Scripts used in our paper (Utilization of Nanopore Direct RNA Sequencing to analyze intracellular viral RNA modifications of the Sindbis virus)

    lrslab/DRS_vRNA_modification_content’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Jul 12, 2024
  • nanoCEM Public

    "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.

    lrslab/nanoCEM’s past year of commit activity
    Python 11 MIT 1 0 0 Updated Jun 3, 2024
  • MethylBin Public
    lrslab/MethylBin’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated May 31, 2024
  • Hammerhead Public

    This project is designed to find the potential modifications in bacterial genomes.

    lrslab/Hammerhead’s past year of commit activity
    Python 7 GPL-2.0 1 0 0 Updated May 21, 2024
  • Giraffe_View Public Forked from lxd98/Giraffe_View

    Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.

    lrslab/Giraffe_View’s past year of commit activity
    Python 4 MIT 2 0 0 Updated Apr 27, 2024
  • ONT_DRS_bacteria_script Public Forked from JeremyQuo/ONT_DRS_bacteria_script

    Script of our Paper "Analysis of Transcriptome and Epitranscriptome in Bacteria Using Nanopore Direct RNA Sequencing"

    lrslab/ONT_DRS_bacteria_script’s past year of commit activity
    Python 0 1 0 0 Updated Mar 8, 2024
  • lrslab.github.io Public
    lrslab/lrslab.github.io’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 5, 2024
  • Bacteria-Multisequencing Public

    Open Repository of Scripts and Resources for Nanopore and NGS Sequencing of Eight Bacteria

    lrslab/Bacteria-Multisequencing’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 18, 2024
  • trackclusterv Public Forked from Runsheng/trackcluster

    Viral Nanopore direct-RNA sequencing analysis pipeline, designed for RNA virus with complex genomic/subgenomic structures

    lrslab/trackclusterv’s past year of commit activity
    Python 0 3 0 0 Updated Dec 6, 2023
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…