ncbiClusters

Get a report of new clusters via the NCBI Pathogen Detection Pipeline

Usage

perl downloadClusters.pl resultsSet remoteDir

Where remoteDir is the Pathogen Detection Pipeline directory from which to retrieve results and resultsSet is the taxon to download, e.g., Listeria

Requirements

• Perl v5.12 or greater
• BioPerl
• ps2pdf (required for pdf instead of ps reports)

Getting help

perl scripts/downloadClusters.pl -h