SDFEater 1.5.0: SDFEater ❤️ MolecularEntitly!

Now SDFEater supports structured data formats in JSON-LD, RDFa and Microdata. Not only that, the MolecularEntitly type support has also been added to other formats.

What are structured data?

Structured data are additional data placed on websites. They are not visible to ordinary internet users, but can be easily processed by machines. There are 3 formats that we can use to save structured data - JSON-LD, RDFa and Microdata. SDFEater supports them all and use MolecularEntitly type.

Currently supported output formats

• cypher - Cypher molecule, atoms, bonds and relation ready to import to the Neo4j graph database,
• cvme - CVME file format based on SKOS,
• smiles - plain text SMILES (if available in the molecule property)
• inchi - plain text InChI (if available in the molecule property)
• turtle - Terse RDF Triple Language (based on MolecularEntitly type)
• ntriples - N-Triples (based on MolecularEntitly type)
• rdfxml - RDF/XML (based on MolecularEntitly type)
• rdfthrift - RDF Binary encoding using Thrift (based on MolecularEntitly type)
• jsonldhtml - JSON-LD with HTML (based on MolecularEntitly type)
• jsonld - JSON-LD (based on MolecularEntitly type)
• rdfa - Simple HTML with RDFa (based on MolecularEntitly type)
• microdata - Simple HTML with Microdata (based on MolecularEntitly type)

Commits

• [e2ea6e5]: Add Zenodo DOI badge to README (Łukasz Szeremeta)
• [c471948]: Add example CVME parser output to README (Łukasz Szeremeta)
• [d8b4231]: Update issue templates (Łukasz Szeremeta)
• [9897930]: add support for (bio)schema.org (domel)
• [4a7208e]: Idea project configurations & updated .gitignore (Łukasz Szeremeta)
• [8ac2000]: Add new formats (Łukasz Szeremeta)
• [0bcc805]: Update README (Łukasz Szeremeta)
• [c07304e]: Improve parser performance & better code (Łukasz Szeremeta)
• [eca2b3e]: Jena formats fully base on BioSchemas (Łukasz Szeremeta)
• [e964ddb]: Better DrugBank support for Jena formats (Łukasz Szeremeta)
• [22a9780]: Add more DrugBank keys support for Jena formats (Łukasz Szeremeta)
• [5d54cb2]: Add rdf:type for Jena formats (Łukasz Szeremeta)
• [f5c4c6d]: Replace mention about Bioschemas by MolecularEntitly in README (Łukasz Szeremeta)
• [9fde9c4]: Add RDFa output (Łukasz Szeremeta)
• [dacfe18]: Add Microdata output format (Łukasz Szeremeta)
• [0a76c9c]: Compound -> Molecule (Łukasz Szeremeta)
• [40a2a0f]: Add (Łukasz Szeremeta)
• [f1fa13c]: Add missing license mention in README (Łukasz Szeremeta)
• [ca83a68]: Add JSON-LD with HTML output (Łukasz Szeremeta)
• [d63addd]: Update maven.yml (Łukasz Szeremeta)
• [80ee596]: Change JDK version from 1.8 to 11 (Łukasz Szeremeta)
• [0e340fa]: Add .travis.yml (Łukasz Szeremeta)
• [1068b3d]: Update dependencies and plugins (Łukasz Szeremeta)
• [7567e71]: actions/checkout@v1 -> actions/checkout@v2 (Łukasz Szeremeta)
• [3caf66c]: Add new workflows for releases (Łukasz Szeremeta)
• [0d1001e]: Bump version to 1.5 in pom.xml (Łukasz Szeremeta)
• [810cf4d]: Mark tagged releases draft (Łukasz Szeremeta)
• [b349919]: Change Maven project version to 1.5.0 (Łukasz Szeremeta)
• [a967160]: Update output format list in SDFEater help (Łukasz Szeremeta)
• [028dd7f]: Remove duplicated jsonld mention in SDFEater help (Łukasz Szeremeta)
• [d48de76]: GitHub Actions improvements (Łukasz Szeremeta)
• [27819e1]: Improve README (Łukasz Szeremeta)
• [f02e4d1]: Add See also to README (Łukasz Szeremeta)
• [762e704]: Add dist to .travis.yml (Łukasz Szeremeta)
• [4c3f9e1]: oraclejskd11 -> openjdk11 in .travis.yml (Łukasz Szeremeta)
• [657b07e]: Remove ? from heading in README (Łukasz Szeremeta)
• [735afa6]: latest -> beta in pre-release.yml (Łukasz Szeremeta)
• [9df2f9f]: Remove unnecessary LICENSE in releases assets (Łukasz Szeremeta)