Formatting sourmash for CAMI evaluations
This repo has the snakemake pipeline for running CAMI 2 evaluations (with OPAL), including indices preparation based on the CAMI 2 databases.
The snakemake pipeline is continuously built by GitHub Actions on every change, and OPAL reports are published to github pages. Here are the links to access them:
- CAMI I low complexity challenge dataset: Metalign results from their repo, results for other tools come from the OPAL repo.
- CAMI II mouse gut toy dataset: I ran Metalign based on the setup instructions and running with example data wiki pages, and other tools results are from the official data repository for the CAMI 2 challenges.
Other similar CAMI evaluation repos
These are other tools which participated in CAMI before and made their submission process public.