Skip to content
Preparing sourmash for CAMI 2 evaluations
Python
Branch: master
Clone or download

Latest commit

Fetching latest commit…
Cannot retrieve the latest commit at this time.

Files

Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
.github/workflows reran with new gather-to-opal and refseq LCA index Mar 17, 2020
data updated metalign profile for cami_i_low, matching configs used to gen… Mar 18, 2020
outputs
rules small reorg Mar 17, 2020
.gitignore update cami_i_low profile with strains Feb 26, 2020
README.md update readme with sources for data Mar 17, 2020
Snakefile small reorg Mar 17, 2020
environment.yml

README.md

Formatting sourmash for CAMI evaluations

.github/workflows/bench.yml

This repo has the snakemake pipeline for running CAMI 2 evaluations (with OPAL), including indices preparation based on the CAMI 2 databases.

The sourmash biobox definition is currently in sourmash-bio/bioboxes

Examples

The snakemake pipeline is continuously built by GitHub Actions on every change, and OPAL reports are published to github pages. Here are the links to access them:

Other similar CAMI evaluation repos

These are other tools which participated in CAMI before and made their submission process public.

You can’t perform that action at this time.