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only keep most recent version for each minor bump
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luizirber committed Jan 9, 2020
1 parent 83ea237 commit 50f1c06
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Showing 8 changed files with 2,417 additions and 2,159 deletions.
4 changes: 2 additions & 2 deletions Snakefile
Expand Up @@ -5,8 +5,8 @@ S3 = S3RemoteProvider(keep_local=True)
COMMANDS_KSIZE = ["gather", "search", "lca_gather", "lca_search", "compare"]
COMMANDS = COMMANDS_KSIZE + ["compute"]

# VERSIONS = ["2.0.0", "2.0.1", "2.1.0", "2.2.0", "2.3.0", "2.3.1", "3.0.0", "3.0.1"]
VERSIONS = ["2.3.1", "3.0.0", "3.0.1", "rust_sig"]
VERSIONS = ["2.0.1", "2.1.0", "2.2.0", "2.3.1", "3.0.1", "rust_sig"]
#VERSIONS = ["2.3.1", "3.0.0", "3.0.1", "rust_sig", "feature/unload"]


rule all:
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16 changes: 16 additions & 0 deletions envs/sourmash_feature/unload.yml
@@ -0,0 +1,16 @@
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- python=3.7.3
- screed >=0.9
- cffi
- numpy=1.17.3
- matplotlib
- scipy
- khmer >=2.1
- yajl
- bam2fasta=1.0.1
- pip:
- git+https://github.com/dib-lab/sourmash@feature/unload#egg=sourmash

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