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Computational Environment

All processing and analysis scripts were performed using the conda environment specified in environment.yml. To build and activate this environment run:

conda env create --force --file environment.yml

conda activate sourmash_resources

Plots

compute

index

search

gather

lca search

lca gather

compare

Resources (for latest)

command s hⓂ️s max_rss max_vms max_uss max_pss io_in io_out mean_load
compute 28.9644 0:00:28 25.17 452.46 21.90 22.77 69.74 0.00 51.69
search 6.5236 0:00:06 240.85 668.89 237.73 238.55 3515.33 0.00 86.17
gather 28.4542 0:00:28 2198.07 2971.91 2194.98 2195.84 1406.25 0.00 54.06
lca_search 41.7801 0:00:41 3590.98 4018.90 3587.96 3588.79 261.56 0.00 36.98
lca_gather 43.2280 0:00:43 3590.91 4018.90 3587.92 3588.76 261.56 0.00 35.60
compare 2.4714 0:00:02 48.12 508.76 45.02 45.86 31.80 0.00 62.34
index 18.9217 0:00:18 526.86 954.88 523.93 524.76 242.65 171.25 79.49

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