3.2.2

sourmash-bio · Feb 14, 2020 · a9fc9e9 · a9fc9e9
1 parent 1271492
commit a9fc9e9
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Showing 9 changed files with 1,590 additions and 1,531 deletions.
diff --git a/Snakefile b/Snakefile
@@ -1,7 +1,7 @@
 COMMANDS_KSIZE = ["gather", "search", "lca_gather", "lca_search", "compare"]
 COMMANDS = COMMANDS_KSIZE + ["compute"] + ["index"]
 
-VERSIONS = ["2.0.1", "2.1.0", "2.2.0", "2.3.1", "3.0.1", "3.1.0", "3.2.1", "master"]
+VERSIONS = ["2.0.1", "2.1.0", "2.2.0", "2.3.1", "3.0.1", "3.1.0", "3.2.2", "master"]
 
 rule all:
   input: expand("plots/{command}.svg", command=COMMANDS)
@@ -185,3 +185,12 @@ rule lca_classify:
                      {input.sig} \
                      {input.db}
   """
+
+onstart:
+  shell("scripts/cpu_freq_benchmark")
+
+onerror:
+  shell("scripts/unset_cpufreq.sh")
+
+onsuccess:
+  shell("scripts/unset_cpufreq.sh")
diff --git a/envs/sourmash_3.2.1.yml → envs/sourmash_3.2.2.yml b/envs/sourmash_3.2.1.yml → envs/sourmash_3.2.2.yml
@@ -4,4 +4,4 @@ channels:
   - defaults
 dependencies:
   - python=3.7.3
-  - sourmash=3.2.1
+  - sourmash=3.2.2