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Rename option "extract-filtered-source-candidates"
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To "use-filtered-source-candidates"
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Daniel Cooke committed Feb 5, 2019
1 parent 8f40fc3 commit 6972ffa
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions src/config/option_parser.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -337,9 +337,9 @@ OptionMap parse_options(const int argc, const char** argv)
po::value<Phred<double>>()->implicit_value(Phred<double> {2.0}),
"Only variants with quality above this value are considered for candidate generation")

("extract-filtered-source-candidates",
("use-filtered-source-candidates",
po::value<bool>()->default_value(false),
"Extract variants from source VCF records that have been filtered")
"Use variants from source VCF records that have been filtered")

("min-base-quality",
po::value<int>()->default_value(20),
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